Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00605 ATGGCTGATATTTCTGTTACAAAAGCATATTGGGCAAGGAGGAAAGCACAACAGAAGCTAGAAGGTGCGGCCAAAGAACAATATGGCAGGATATGGGACTACTGTGAAGAAGTGAGGTCCAAGAATCCAGGATCAACTTTGAAGCTTGGTGGGTTGAATTCAATGTTAGGTGTTGAACATTTTCCTTCCATTCCTGTTGTTTCCAAAGTTCCCACCATCATTCTTGGCATGGATGTGTCTCATGGCTCACCAGGACAATCTGATATTCCTTCAATTGCAGCGGGTTTCCGATTTCACCTTTTGCCGTGTGTTTCTGCTACTGTTTCTCCGGATATGGATTCGTTTGGGTCTAATGGAAATGAGAATGAGGATTCTTTGCCACCACCACCTCCCGTTGTCCCTTCAGATGTTGTACCAGTCAAAGCTGAACCAGAGCTCCCCCCTGAGCCAGCTAAGAAAAAGGTTTCCCGTGTTCCAGTAGCTAGGCGTGGTCTTGGAACAAAGGGAATGAAGCTGCCCCTTCTAACCAATCACTTCAAAGTTAATGTTGCTAACAACGACGGACATTTCTTTCAGTATAGTGTCTCTGTTTCTTATGAAGATGGACGCCCTGTAGAAGGAAAGGGTGTAGGGAGAAAAGTGATAGACAGGGTTCAGGAAACTTATGATTCTGAGTTGAATGGAAAGGACTTTGCCTATGATGGTGAAAAAACACTGTTTACTATTGGCTCTCTTGCTCGAAACAAGCTTGAGTTTACAGTTGTTCTGGAGGATGTCACCTCAAACAGAAATAATGGAAACTGCAGCCCCGAAGCTCAGGGGAGTCCAAATGAGAGTGACCGGAAGAGGATGCGACGCCCCTACCGTGCCAAGACATTCAAAGTTGAGATCAGCTTTGCTGCAAAAATTCCATTGCAGGCCATTTCCAATGCCTTGCGTGGACAGGAATCAGAGAATTATCAAGAAGCCATTAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAGCAAGGCTGCCTGCTTGTGCGCCAGTCATTCTTCCACAATGATCCTAAGAATTATGCAGATGTAGGAGGTGGTGTCCTGGGATGCAGAGGGTTCCATTCCAGTTTTAGAACTACACAAAGTGGCCTTTCTCTTAATATAGATGTCTCCACTACGATGATAATTCAACCTGGGCCTGTGGTGGACTTCTTAATTGCCAATCAAAATGTGAGAGATCCTTTTTCACTTGATTGGGCAAAGGCCAAAAGGACACTAAAAAATCTGAGGATCAAAACCAGCCCATCCAATCAAGAGTACAAAATTACAGGGCTTAGTGAACTGCCATGCAAAGAGCAGATGTTTACTCTGAAGAAGAAAGGTGGAGGTAATGGTGAAGATGTCACCGAGGAGGAAATAACTGTTTATGATTATTTTGTTAATTTTCGTAAGATAGATCTCCGGTATTCTGGTGATCTTCCATGTATCAATGTTGGCAAGCCAAAACGGCCAACTTATGTCCCCATTGAGCTTTGCTCTTTGGTATCCCTTCAACGTTATACAAAAGCACTTTCCACACTTCAAAGGGCTTCGCTAGTGGAGAAGTCCAGACAGAAGCCCCAAGAAAGGATGAGGGTTTTGTCTGATGCACTTAAAACCAGCAATTATGGCTCTGAACCCTTGCTTCGCAATTGTGGAATTTCAATTCAGTCTGGTTTTACTCAAGTTGAGGGTCGTGTTTTGCAAGCCCCAAGGTTGAAATTTGGCAATGGGGAGGATTTCAATCCAAGGAATGGGAGATGGAATTTCAATAATAAGAGATTAGTACAGCCGACTAAGGTAGAAAGGTGGGCCGTGGCTAACTTTTCTGCACGATGTGATGTACGAGGACTTGTTAGGGATCTGATTAAATGTGGAGATATGAAAGGAGTGCTGATAGAACCTCCTTTCGATGTATTCGAAGAAAATGGTCAGTTTCGGCGTGCCCCACCAGTGGTTAGAGTGGAGAAAATGTTTGAGACCATTCAGTCCAAACTTCCTGGAGCTCCTCAGTTTCTTCTTTGTCTGCTTCCTGAGCGGAAAAACTCTGATCTTTATGGTCCATGGAAGAAGAAATGTCTTGCTGAATTCGGAATCGTTACTCAGTGCATATCTCCTACAAGGGTCAACGACCAATATCTTACGAATGTTCTGTTGAAGATCAATGCTAAGCTTGGTGGGTTAAATTCAATGTTAGGTGTTGAACATTCTCCTTCCATTCCTGTTGTTTCCAAAGTCCCCACCATCATTCTTGGCATGGATGTGTCTCATGGCTCACCAGGGCAATCTGATATTCCTTCAATTGCAGCGGTTGTCAGCTCTAGACAGTGGCCTCTAATTTCAAAGTATAGGGCATGTGTGCGCACCCAGTCTCCTAAAGTTGAAATGATTGATAATTTGTTCAAGCAAGTGTCTGAAAAGGAGGATGAAGGAATCATAAGGGAGCTTCTGATTGATTTCTACACAAGTTCGGGGAAGAGAAAACCAGACAATATTATAATATTCAGGGATGGTGTCAGTGAGTCCCAGTTTAATCAAGTTTTGAACATTGAACTCAATCAAATCATTGAGGCCTGTAAATTTCTTGATGAAACATGGAACCCCAAATTTTTGGTGATTGTTGCTCAGAAGAATCATCATACAAAATTCTTCCAGCCTGGATCTCCCGACAATGTGCCTCCTGGAACTGTTATTGATAACAAAATTTGTCATCCTCGAAGTTATGATTTCTACTTGTGTGCACATGCGGGAATGATAGGTACAAGCAGGCCGACTCACTATCATGTTTTGTTAGATGAGATTGGTTTTTCTCCTGATGATCTACAGGAGCTTGTCCATTCTCTGTCTTATGTGTATCAGAGGAGTACCACCGCCATCTCTGTTGTTGCACCAATATGCTATGCTCACTTGGCTGCGTCTCAGATGGGGCAGTTCATGAAATTTGATGACAAATCTGAGACCTCCTCAAGTCATGGTGGTGTGACTGCTGCGGGCCCTGCTTCCGTACCTCAGCTGCCCAAATTGCAGGAAAATGTCTGCAACTCGATAAATTGGAAAACCCCAATCATAAAAACTCATCGTTCTTCACCTCACCCGAGCCACCATCACTGTTCAGGTAATTTTATTAGGCACCTTGGCGACCCAGTAGTTGTCTTCCCTGCTGTGTTGCTGCCATCAATAGTCATCAGATCAGTCATGGTGCAAGAAAGTGGCAAGAGGAAGAGGCCAAACATTCTGGTGACTGGGACACCAGGAACAGGAAAGACAACCATGTCAACTGCTCTAGCGGAAGCCACTCAGCTCCGTCACATCAATGTTGGAGAATTGGTCAAAGAGAAGAACTTGCATGATGGCTGGGATGATGAGCTTGATTGTTATGTTCTTAATGAAGACTTGGTCTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTATCATGGCTGTGATTTCTTTCCCGAGCGATGGTTTGATTGTGTGGTTGTACTTCAGACTGATAACACCATTTTGTATGACCGTTTGAGCAGGAGAGGATACAACGATGCAAAGCTTTCCAACAACATTGAATGTGAAATCTTTCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACCCGGAGGACAGAGTGGTTGCAATGAAGAGTGATACTATTGAAAACATTAGTACAAATGTTGCAACCCTGACAGATTGGGTCAGAAATTGGCTTTTACAGTCCCAGTCATAA 3759 0.4366 MADISVTKAYWARRKAQQKLEGAAKEQYGRIWDYCEEVRSKNPGSTLKLGGLNSMLGVEHFPSIPVVSKVPTIILGMDVSHGSPGQSDIPSIAAGFRFHLLPCVSATVSPDMDSFGSNGNENEDSLPPPPPVVPSDVVPVKAEPELPPEPAKKKVSRVPVARRGLGTKGMKLPLLTNHFKVNVANNDGHFFQYSVSVSYEDGRPVEGKGVGRKVIDRVQETYDSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVTSNRNNGNCSPEAQGSPNESDRKRMRRPYRAKTFKVEISFAAKIPLQAISNALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWAKAKRTLKNLRIKTSPSNQEYKITGLSELPCKEQMFTLKKKGGGNGEDVTEEEITVYDYFVNFRKIDLRYSGDLPCINVGKPKRPTYVPIELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALKTSNYGSEPLLRNCGISIQSGFTQVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKRLVQPTKVERWAVANFSARCDVRGLVRDLIKCGDMKGVLIEPPFDVFEENGQFRRAPPVVRVEKMFETIQSKLPGAPQFLLCLLPERKNSDLYGPWKKKCLAEFGIVTQCISPTRVNDQYLTNVLLKINAKLGGLNSMLGVEHSPSIPVVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKQVSEKEDEGIIRELLIDFYTSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQIIEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRSYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQMGQFMKFDDKSETSSSHGGVTAAGPASVPQLPKLQENVCNSINWKTPIIKTHRSSPHPSHHHCSGNFIRHLGDPVVVFPAVLLPSIVIRSVMVQESGKRKRPNILVTGTPGTGKTTMSTALAEATQLRHINVGELVKEKNLHDGWDDELDCYVLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYNDAKLSNNIECEIFQVLLEEAKESYPEDRVVAMKSDTIENISTNVATLTDWVRNWLLQSQS* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00605 1252 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 155 990 - -
Rops9g00605 1252 Gene3D - 747 1026 IPR036397 GO:0003676
Rops9g00605 1252 Pfam AAA domain 1086 1205 - -
Rops9g00605 1252 FunFam Protein argonaute 7 388 515 - -
Rops9g00605 1252 Pfam N-terminal domain of argonaute 172 331 IPR032474 -
Rops9g00605 1252 FunFam Protein argonaute 3 748 1027 - -
Rops9g00605 1252 Pfam PAZ domain 397 527 IPR003100 GO:0005515
Rops9g00605 1252 Gene3D - 1076 1250 IPR027417 -
Rops9g00605 1252 SUPERFAMILY Ribonuclease H-like 664 986 IPR012337 -
Rops9g00605 1252 MobiDBLite consensus disorder prediction 124 145 - -
Rops9g00605 1252 Gene3D - 575 741 - -
Rops9g00605 1252 ProSiteProfiles Piwi domain profile. 680 988 IPR003165 GO:0003676
Rops9g00605 1252 Gene3D paz domain 387 515 - -
Rops9g00605 1252 FunFam Adenylate kinase isoenzyme 6 homolog 1078 1251 - -
Rops9g00605 1252 Pfam Piwi domain 681 988 IPR003165 GO:0003676
Rops9g00605 1252 ProSiteProfiles PAZ domain profile. 418 511 IPR003100 GO:0005515
Rops9g00605 1252 SMART DUF1785_2 341 393 IPR014811 -
Rops9g00605 1252 SMART Piwi_a_2 680 988 IPR003165 GO:0003676
Rops9g00605 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1082 1244 IPR027417 -
Rops9g00605 1252 SUPERFAMILY PAZ domain 388 551 IPR036085 GO:0005515
Rops9g00605 1252 MobiDBLite consensus disorder prediction 263 286 - -
Rops9g00605 1252 CDD PAZ_argonaute_like 393 510 - -
Rops9g00605 1252 Pfam Argonaute linker 2 domain 537 583 IPR032472 -
Rops9g00605 1252 Hamap Putative adenylate kinase. 1084 1249 IPR020618 GO:0004017|GO:0005524|GO:0016887
Rops9g00605 1252 Pfam Argonaute linker 1 domain 343 391 IPR014811 -
Rops9g00605 1252 CDD Piwi_ago-like 555 980 IPR045246 -
Rops9g00605 1252 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00605 Rops-Chr9 8549185 8585995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00605 162 1020 Eukaryotic Initiation Factors Gene Family AT5G43810 35.754 9.12e-163 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00605 K11593 - gmx:100779439 1605.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00605 9 8549185 8585995 Rops9g00605 9 8549185 8585995 ECH