Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00601 ATGGCCAAGAAGCGAAAGCTTCGATCTTCCGAACCCGAACCCACTAAGCCAGTGGAACCACAACAACAAGACCAAGAGGTTGTGGAAGAAGAGAACCAACAATCCAACGCCGAACAAACCCTAGACCATGAAGAAGAACACAACAACAACAACAACATGGCCGTCGACGAAGAAGACCAAGCCCCAATACAAGAAGAAAATCAACCTCAAAACGAAGAAGAACAAGAAGGAGAACAAGAAGAAGAAACCCTAGAAGACCAACAACAAGAGCCGGAGCAGGAAGATCTAGAAGCTTCGAACCCTGCTGCTGCCACGTCGGATTCTGTTGCTGTGGAAGCGAACGGTGGTGCGGAGGAAGGTAAAAGCGAAGCAGAAGAAGACCTCGATTTGGATGATGAACCTGTTGAGAAGCTTCTGGAACCTTTCACGAAGGAGCAGTTACACTCTCTGGTGAAACAAGCCGTTGAGAAGTACCCTGATTTCGTTGAGAATCTTCGTCAGCTTGCTGACGTGGACCCAGCTCACCGGAAAATCTTCGTCCATGGCCTCGGTTGGGATACCACCGCCGAAACCCTAACCGGAGTTTTTGGGAAATATGGTGAGATCGAAGATTGCAAGGCTGTAACTGATAAAGTTTCTGGGAAATCGAAGGGTTATGCTTTCATTTTGTTCAAGCATAGAAGTGGAGCTCGTAAGGCATTGAAACAGCCCCAGAAGAAGATTGGGAACAGAACGACGTCGTGTCAATTGGCCTCCGCCGGACCTGTTCCAGCACCACCGCCGAATGCACCGGCGGTTTCGGAATACACCCAAAGGAAGATTTTTGTGAGCAATGTGAATTCGGAGATTGATCCCCAGAGGTTGCTTGAGTTCTTCAAACAATTTGGGGAGGTTGATGATGGTCCTCTTGGTCTTGATAAACAAACAGGGAAGCCTAAAGGATTTGCACTATTTGTGTACAAATCAGTGGAGAGTGCAAAGAAGGCTTTGGAAGAGCCACACAAGAATTTTGAGGGGCACACTTTGTATTGTCAAAGGGCTGTTGATGGTCCTAAAGGAAACAAAGGGTTTCATCAGCAACAACACCATCATCAGCCTCACCACCACCACCATCATCAGCCTCATTATAATCAAAGGAAAGAGAAGAATAAGTATAATTCTGGTGGTGGGCCATCACATGGTGGTGGTGGTCACCTCATGGCACCTTCAGCCCCTGCTGTTGGGGGTTTCAATCCAGGGGTGCCGGCTCAGGGGTTGAACCCTGCACTTGGACAGGCTTTAACTGCTTTGCTTGCGAATCAAGGAGCTGGATTGGGACTTGGGAATCTGCTTGGAGGTATGGGCGGTGCACCGGTGAACCAGGCTGGGCCACCTGCTACTGCATATGGTAATCAGGCTGCTGCCATGAGCTATGGGAACCAGCCAGGAATGCAACCTGGATATCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGACCTCACCCTGGTCCTGGCGCTCCTTACATGGGTCATTAG 1518 0.4928 MAKKRKLRSSEPEPTKPVEPQQQDQEVVEEENQQSNAEQTLDHEEEHNNNNNMAVDEEDQAPIQEENQPQNEEEQEGEQEEETLEDQQQEPEQEDLEASNPAAATSDSVAVEANGGAEEGKSEAEEDLDLDDEPVEKLLEPFTKEQLHSLVKQAVEKYPDFVENLRQLADVDPAHRKIFVHGLGWDTTAETLTGVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPAPPPNAPAVSEYTQRKIFVSNVNSEIDPQRLLEFFKQFGEVDDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQRAVDGPKGNKGFHQQQHHHQPHHHHHHQPHYNQRKEKNKYNSGGGPSHGGGGHLMAPSAPAVGGFNPGVPAQGLNPALGQALTALLANQGAGLGLGNLLGGMGGAPVNQAGPPATAYGNQAAAMSYGNQPGMQPGYQNPQMGQSSGVRPHPGPGAPYMGH* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00601 505 MobiDBLite consensus disorder prediction 473 505 - -
Rops9g00601 505 MobiDBLite consensus disorder prediction 15 35 - -
Rops9g00601 505 SUPERFAMILY RNA-binding domain, RBD 256 366 IPR035979 GO:0003676
Rops9g00601 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 355 IPR000504 GO:0003723
Rops9g00601 505 Gene3D - 262 398 IPR012677 -
Rops9g00601 505 MobiDBLite consensus disorder prediction 348 404 - -
Rops9g00601 505 Gene3D - 168 254 IPR012677 -
Rops9g00601 505 MobiDBLite consensus disorder prediction 59 93 - -
Rops9g00601 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 48 370 - -
Rops9g00601 505 SMART rrm1_1 273 345 IPR000504 GO:0003723
Rops9g00601 505 SMART rrm1_1 177 249 IPR000504 GO:0003723
Rops9g00601 505 MobiDBLite consensus disorder prediction 473 490 - -
Rops9g00601 505 SUPERFAMILY RNA-binding domain, RBD 165 257 IPR035979 GO:0003676
Rops9g00601 505 MobiDBLite consensus disorder prediction 1 132 - -
Rops9g00601 505 MobiDBLite consensus disorder prediction 357 378 - -
Rops9g00601 505 Coils Coil 27 47 - -
Rops9g00601 505 MobiDBLite consensus disorder prediction 36 53 - -
Rops9g00601 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Rops9g00601 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 342 IPR000504 GO:0003723
Rops9g00601 505 Coils Coil 70 90 - -
Rops9g00601 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00601 Rops-Chr9 8520634 8525264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00601 265 351 C2H2 Transcription Factor Family AT2G19380 28.736 1.93e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00601 K12741 - gmx:100792637 606.29