Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00589 ATGGGAAACTCTTGCAGAAAACCAGTTGCTCATGTGTCTACCACAGGTATTTTTGGAAGTATAAAGTCTCAAAGTAAGACAAAGCAGAATTCAAATTCTCCTGAACGAAAAGCTGCTTTGAAAACTTCAGCATCAAATGTTGACAAACCCATCTCCAATAGCATCAAGTCCTTCACCTTCAATGATCTAAAGGAGGCCACCAAGAACTTCCGGCAAGAAAATTTAATTGGGGAGGGAGGGTTTGGGTTTGTCTTCAAGGGATGGATAGATAAGAACACTGGTGCTCCCACAAGACCAGGGACTGGGAGTGTAGTGGCCATTAAGAAGCTCAAGCAAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACTTCACCATGAAAATTTGGTGAAACTTATTGGTTACTGCTCAGAAGGTAAAAACAGGCTTCTAGTTTATGAGTTTCTGCAGAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAGGTGTTCAACCCATTTCCTGGATTACACGGATCAATATTGCTATTGCTGTTGCAAGAGGATTAGCATTCTTACATTCCCTTGATGCAAATGTTATCTATCGTGATTTAAAGGCTTCCAATGTCCTACTTGATTCGGATTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTCATTGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACTCCAAGGAGTGATGTGTACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACAGGAAGGCGGGTAGTTGAAGATGAGAGACCTGGATTTTCAGAAGAAACATTGGTTGATTGGGCAAGGCCCTTCTTGAGTGACAACAGAAGAATTTTGAGAATCATGGATTCAAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTGTTCAGCAATGTTTGAATACTGATCCCAAATATAGACCACCAATGGTTAATGTTCTAGCTGCATTGGAAGCATTACAATCCTCAAATTCAATGCCAAGGACCCCAAAATCTGGAACTGAGAAACATGCAACCAAGCATTCTAGTCAATGCCAAAAGTCGGTTGGCAATACTAATAAACCTTGA 1170 0.4137 MGNSCRKPVAHVSTTGIFGSIKSQSKTKQNSNSPERKAALKTSASNVDKPISNSIKSFTFNDLKEATKNFRQENLIGEGGFGFVFKGWIDKNTGAPTRPGTGSVVAIKKLKQESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSEGKNRLLVYEFLQKGSLENHLFRKGVQPISWITRINIAIAVARGLAFLHSLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDNRRILRIMDSRLGGQYSKKGAQAAAALVQQCLNTDPKYRPPMVNVLAALEALQSSNSMPRTPKSGTEKHATKHSSQCQKSVGNTNKP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00589 389 CDD STKc_IRAK 76 354 - -
Rops9g00589 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Rops9g00589 389 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Rops9g00589 389 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Rops9g00589 389 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 365 - -
Rops9g00589 389 MobiDBLite consensus disorder prediction 20 45 - -
Rops9g00589 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00589 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00589 389 MobiDBLite consensus disorder prediction 356 389 - -
Rops9g00589 389 SUPERFAMILY Protein kinase-like (PK-like) 46 359 IPR011009 -
Rops9g00589 389 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Rops9g00589 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00589 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Rops9g00589 389 PANTHER OS01G0588500 PROTEIN-RELATED 28 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00589 Rops-Chr9 8418084 8422077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00589 30 351 Glycoside Hydrolase AT3G07070 49.848 5.19e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops9g00589 Pkinase 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00589 - - gmx:102664409 666.766