Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00583 ATGGCAATTGCAACCCCAGGGCAACTCAACGTGAATGAATCCCCTTATTCGGGATCCAGAAGTGTTGATTGCTTCGAGAAATTGGAGCAAGTTGGCGAGGGCACTTATGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATCCGAATGGATAACGAGAGAGAGGGGTTTCCTATAACTGCTATCCGAGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGATTAAGCTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGGGATTGCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGATCAAAATGCAAATCTTACAAACCGTGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCTGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAGGATGAGCCAGAACAATTAAATAAAATATTTGAGCTGTGTGGAGCACCAGATGAGGTCAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGGCCAATGAAAAGACGTCTGAGGGATGTTTTTAGGCATTTTGATCGTAATGCTCTGGAATTGTTGGAGAGGATGCTGACACTTGATCCAGCTCAGAGAATTACTGCAAAGGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGATCCTAAGAGTTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAGCAACAACGGCAGAATGAAGAAATGGCTAAGCGTCAGAAAATGCAACATCCACAGCATCACACTCGCCTTCCCCCCATTCAACAGTCCGGGCAGCATGCTCAAATGCGGTCAGGACCTAACCAGCCAATTCATGGATCTCAACCTCAAGTTGCTGCAGGACCTTCTCATCATTATGGGAAGCCTCGAGGTCCATCTGGTGGGCCCGGAAGATATCCCCCCAATGGAAACCCTGGTGGAGGATACAATCACCCGAATCGTGGAGGTCAAGGAGGTGGTTATGGCAGTGGACCTTATCCTCCTCAAGGACGGGGGGCACCTTATGGATCCAGTGGTATGCCTGGTGGTGGCAGCGGCTATGGAGTTGGAGCTCCAAATTATCCCCAACAACAAGGTGGTCCATACGGGGGCTCAGCGGCTGGTCGTGGTTCAAACATGATGGGTGGAAACCGCAATCAACTGTATGGTTGGCAGCAATAA 1542 0.454 MAIATPGQLNVNESPYSGSRSVDCFEKLEQVGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPGIADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPSRPMKRRLRDVFRHFDRNALELLERMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQHHTRLPPIQQSGQHAQMRSGPNQPIHGSQPQVAAGPSHHYGKPRGPSGGPGRYPPNGNPGGGYNHPNRGGQGGGYGSGPYPPQGRGAPYGSSGMPGGGSGYGVGAPNYPQQQGGPYGGSAAGRGSNMMGGNRNQLYGWQQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00583 513 CDD STKc_CDK9_like 25 327 - -
Rops9g00583 513 SUPERFAMILY Protein kinase-like (PK-like) 20 335 IPR011009 -
Rops9g00583 513 FunFam Cyclin-dependent kinase C-2 125 367 - -
Rops9g00583 513 Pfam Protein kinase domain 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00583 513 ProSiteProfiles Protein kinase domain profile. 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00583 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Rops9g00583 513 MobiDBLite consensus disorder prediction 376 403 - -
Rops9g00583 513 SMART serkin_6 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00583 513 MobiDBLite consensus disorder prediction 338 513 - -
Rops9g00583 513 Gene3D Phosphorylase Kinase; domain 1 12 124 - -
Rops9g00583 513 Gene3D Transferase(Phosphotransferase) domain 1 125 367 - -
Rops9g00583 513 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Rops9g00583 513 PANTHER CELL DIVISION PROTEIN KINASE 23 333 - -
Rops9g00583 513 MobiDBLite consensus disorder prediction 499 513 - -
Rops9g00583 513 FunFam Cyclin-dependent kinase C-2 12 124 - -
Rops9g00583 513 MobiDBLite consensus disorder prediction 340 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00583 Rops-Chr9 8367429 8372309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00583 1 513 Core Cell Cycle Gene Families AT5G10270 76.301 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops9g00583 Pkinase 5.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00583 K08819 - gmx:100793565 850.506