Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00580 ATGTCCTTACCACTACCACCACCACCACATGGAAAAGATAGAGATTGTGGTAAAATGGTGGAAAAGGTTCGGTTCAAGAAAGGGCAATGGACATTGGAAGAAGATGAGATTTTAGCAGCATTTGTAGATAAGCATGGAGAAGGTAATTGGAATGCAGTACACAAGCAAACAGGACTTGCACGTTGTGGGAAAAGCTGTCGTCTAAGATGGACAAATCACCTAAGACCAGATTTGAAAAAGGGTTCATTTACTTTACAGGAGCAACGAAAAATTATTGCTCTTCATGCTAAGATTGGAAATAAATGGGCTCAAATGGCCCAAGAGTTGCCTGGACGTACAGACAATGAGATAAAGAACTTTTGGAATACAAGAAGAAAGAAATACGAACGTGTTGGTATGCCACTTTACCCTCCTGACATAATACCACAGATTTTGGATAGCAACCCAGAAAGTCCAAGTTGTTCCAACCAGCATGTTCATGATACCCCATCAGAAGACATATTTGATATACCACAATTGGATTTCACAAAATACAAGCTCAATCATCAGGAACATCCATCATTTATACCATCAATTTCTAACATACCTGAAAGCAGAACCTCTGAACAAGGTTCAGACTCATTCAATTTCCCAATTTTGCAGCCCCCAGATTTGGTTGATGATTCAGATAAACTATACAATAGTTTGGGAAGTTCTAGTACAAGCAATACTCCCCCAACATTGATTGATCAAAATAACATGTTTCAGGGTGATGGCTTTTCTAGCAGTGGCAATCCATTCTATGGGGAAATGGAACCAGAGTTGCCTCCACTCCCATCTATAGAAGAAGCTCAACATGATTGCTGGTGGGACCCGGGTCCATTTCTACCACGTCCATCATTTCCAAGTGGCAATCCATTCTATGGGGAAATGTTGTCAGAGTTGCCTCCACTCCCATCTATAGAAGAAGCTCAACATGGATGCTGGTGGGGCCCGCATGCATCTCCATGTCCATCATGTTCAAGTGGCACTTCCTCCATGTATGGAGCCATGGTGTCTGAGTTACCTCCATTGCCAGGCACAGAAGAAAATCAACAAGGTAGCTGTTGGGACACTCCTGCTGCATCTCTATCTCAGTGTCCTCAAGTTGAGGAGACTCGGTCAAAACCATTTTCTCCACGTAGAAATGGTTTTTTGGAAGCCATATTCTATCCACCACTTCCTTCAACTGATGAGTCTTCTGATACACAGATTCAGCTTCCTCCAGTTGAGGAGACTCGGTCAAAACCATTTTCTCCACGTAGGAATGGTTTTTTGGAAGCCATATTCTATCCACCACTTCCTTCAACTGATGAGTCTTCTGATACACAGATTCAGCCTCCTCCAGTTGAGGAAACTCAGCCAGAACCATTTCCACCAAAGAATTCTAAAGACAATGACACTTGGTCTGACAAGGATCAATCTGTTTTAGATGGTACCTTATCTGCAATTTTTGGTAATGATTTCAAGGTTGTGGCTAGCAATGTAGATACGGTTCAAGAAATGATGAATAGCTGCAAACGTGAAGGAGAAGAGATAAAGGAAGCTTTAGATTCAAGCTCAAGGGGTGATGATCCTGGAGACAAAACTGGTAGTCAAGAAGAGAATGTTGGATCAACCAATGTGACTGATAGTGGCACGCTCAAGAAAGGGAGATGGACAGAAGTAGATATGTAA 1695 0.4218 MSLPLPPPPHGKDRDCGKMVEKVRFKKGQWTLEEDEILAAFVDKHGEGNWNAVHKQTGLARCGKSCRLRWTNHLRPDLKKGSFTLQEQRKIIALHAKIGNKWAQMAQELPGRTDNEIKNFWNTRRKKYERVGMPLYPPDIIPQILDSNPESPSCSNQHVHDTPSEDIFDIPQLDFTKYKLNHQEHPSFIPSISNIPESRTSEQGSDSFNFPILQPPDLVDDSDKLYNSLGSSSTSNTPPTLIDQNNMFQGDGFSSSGNPFYGEMEPELPPLPSIEEAQHDCWWDPGPFLPRPSFPSGNPFYGEMLSELPPLPSIEEAQHGCWWGPHASPCPSCSSGTSSMYGAMVSELPPLPGTEENQQGSCWDTPAASLSQCPQVEETRSKPFSPRRNGFLEAIFYPPLPSTDESSDTQIQLPPVEETRSKPFSPRRNGFLEAIFYPPLPSTDESSDTQIQPPPVEETQPEPFPPKNSKDNDTWSDKDQSVLDGTLSAIFGNDFKVVASNVDTVQEMMNSCKREGEEIKEALDSSSRGDDPGDKTGSQEENVGSTNVTDSGTLKKGRWTEVDM* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00580 564 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Rops9g00580 564 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Rops9g00580 564 Gene3D - 26 79 - -
Rops9g00580 564 CDD SANT 30 74 IPR001005 -
Rops9g00580 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Rops9g00580 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Rops9g00580 564 MobiDBLite consensus disorder prediction 397 481 - -
Rops9g00580 564 Gene3D - 82 127 - -
Rops9g00580 564 MobiDBLite consensus disorder prediction 514 564 - -
Rops9g00580 564 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Rops9g00580 564 MobiDBLite consensus disorder prediction 514 537 - -
Rops9g00580 564 MobiDBLite consensus disorder prediction 538 554 - -
Rops9g00580 564 MobiDBLite consensus disorder prediction 189 209 - -
Rops9g00580 564 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Rops9g00580 564 FunFam MYB-related transcription factor 26 79 - -
Rops9g00580 564 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 442 - -
Rops9g00580 564 MobiDBLite consensus disorder prediction 402 416 - -
Rops9g00580 564 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Rops9g00580 564 CDD SANT 82 123 IPR001005 -
Rops9g00580 564 SMART sant 26 76 IPR001005 -
Rops9g00580 564 SMART sant 79 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00580 Rops-Chr9 8306825 8314131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00580 22 181 MYB Transcription Factor Family AT2G26960 54.878 4.28e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00580 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00580 K09422 - gmx:100800658 263.077