Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00575 ATGAGTCAGCAAAAAGTTAAACGCCGAGTTGGTAAATATGAGGTTGGGAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACTGGGGAGCCAGTGGCTCTCAAAATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAGGCGGGAAGTAGCTACAATGAAGTTAATCAAGCATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAAGACGAAAATATATATTGTTTTGGAGTTTGTGACTGGAGGGGAGCTCTTTGACAAAATTGTAAATCATGGACGCATGAGTGAAAATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTGAAGCCAGAAAATTTGCTATTAGATGCTTTAGGGAACCTTAAAGTTTCCGATTTTGGGTTAAGTGCACTCTCCCAGCAAGTTAGGGATGACGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTATGATGGGGCAACGGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTAGTTGCAGGTTACTTGCCTTTCGATGACTCTAATCTTATAGACCTGTATAAAAAAATCTCAGCTGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCACGGAAATTGATAATTCGAATCTTGGATCCCAATCCCATGACTCGAATCACTATACCTGAGATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAATGGGGAAACCAACCTCGATGATGTAGAAGCTGTCTTTAAAGATTCTGAAGAGCACCATGTGACAGAGAAGAAAGAAGAGCAGCCAACAGCCATGAATGCATTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGATATCGAGCAGGGCTTTAAAAGGGAAACAAGATTCACATCAAAATCCCCTGCCAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGGAGGAAGGGAAACCTTAATGTTGCAACAGAGTGTGGTTCTATGGCAAGGGAGTCCCGTAATTTCGCCTATGATGTTTTCCTCAGTTTTAGAGGAGAGGATACAAGGCAGGCCTTCACAGGATATCTGCACAGAGAGTTGGAGCAGAAGGGAATCAACACCTTCACTGATGATGATGATATTCTGAGGAAAGGGGAAGATATCTCATCTGCTATTTCCAAAGCCATAGAAGAAACCAAGATTTCAATCATCGTGCTATCTGAGAAGTATGCATCCTCCAGGTTGTGTCTGGATGAACTTGTCATGATCTTAGACAGCAGGGAGAGAAACAAGAAACAACTTGTTTTCCCAGTTTTTTACCATGTAGATCCCTCAGATGTACGGTTCCAGCGAAACAGTTATGGCGAAGCAATGACTGCACACGAGATCAGGTTTGGAGAAAACTCCCAGAAAGTGCAAACATGGAGATCAGCTTTGTCTGAAATATGTCAATTAAAAGGGTTACATATTAGTACTACGGGGTTCGAAATCAACTATATTGAAGTGATTGTTCAGGAAGTCTATGATTATGTTAAATCTTTACATGTTGGTCAGGACCAAGTTGAAATTGAGCACAGCAAAGAAGAGGAGACGTTGAAGAAAGAAGAGGAAGAAAAAGAGGACAAAGCGAAAGAAAAGGAAGAGGATGACCTCAATACTATTATCAAGAGTCCAAGATTGATAGTTCCTACTGAAGGGAACTCAGAGGAAAAGAAACTTGATGTAAAGAAAGACATAGTGGCTTTTAATAAGGAAAGCCCAGCCAAGGACGAAAAGGATACTGTTCAAGAAATGATGAATAGCAGCAAACGTGAAGGAGAAGAGATAAAGGAAGCTTTAGATTCAAGCTCAAGGGGTGATGATCCTGGAGACAAAACTGGCAGTCAAGAAGAGAATGTTGGATCAACCAATGTGACTGATAATGGCACGCTCAAGAAAGGGAGATGGACAGAAGAAGAGGATGCAATTTTAGTAGAATATGTAAAGAAGCATGGAGACAGTACCTGGCATGCAATACACAAGCAAACAGGACTTGCACGTAGTGGGAGTAGATGCCGTGACAGATGGATAAATCACCTAAAACCAGGTTTAAAAAAGGGTGAATCATTTACTGAAGAGGAACAGCAAAAAATTATTCGTCTCCATGCTAAGATTGGAAATAAATGGGTTCAAATGGCCCAAGAGTTGCCTGGACGGTCAGAGAATGATATCAAGAACTTTTGGAATACAAGAAGAAAGAGATTGGAACGTGATGGAACGCCACTTTACCCTGCTGATGTAATACCACAGATGTTGGATAGCAACCAAGAAAATCGAGGTTGTTCCAGCCAGCATGTTGATGCCTCATCAGAAGACAAATTGAATTTCTTAAAACACCAGCTCAATCAGGAATATCCATCGTATATACCATCAATTTCTAACATACCTAAAAGCAGAACCTCTGAGCATGGTTCAGACTCATTCAATTTCCCAATGTTGCAGCCCCCAGATTTGGTTGATGATTCAGATAAACTATACAATAGTTTGGGAAGTTCTAGTACAAGCAATACTCCCCCAACATTGATTGATCATCATGATATGTTTCAGGATTATGGCTTTTCTAACATCAATCCATTCTATGGGAAAATGCATTATAAGTTGCCTCCATTCCCATCTACAGAAGAAACTCAACAAGTTGATGAGTCTTCAGATGCACTGATTCAGTGTCCTCCAGTTGAGGAGACTTGGTCAAAATCAGTTTCTCCACGCAGAAATGGTTTATTGGATTCCATATTCTTTACGCCAACTCCTTCAACTGATGAGTCTTCTGATACACAGATTCAGCTTCCTCCAGTTGAGGAGACTCAGCCAGAATCAGTTTCTCCACACAGCAGTGGTTTGTTGGAATCCATACTCTTTACACTTACACCAAAGAATTCGGAAGGCTCAGATACTAGTTCCATGCATCACTCTGAGACAGAAAGGGATAAGCAAGGGGAGCCAAATTCCTGTAACAAGAAAAATTCCAACTAG 3189 0.4114 MSQQKVKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDALGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDSNLIDLYKKISAAEFTCPPWLSFSARKLIIRILDPNPMTRITIPEILEDEWFKKDYKPPVFEENGETNLDDVEAVFKDSEEHHVTEKKEEQPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPANEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATECGSMARESRNFAYDVFLSFRGEDTRQAFTGYLHRELEQKGINTFTDDDDILRKGEDISSAISKAIEETKISIIVLSEKYASSRLCLDELVMILDSRERNKKQLVFPVFYHVDPSDVRFQRNSYGEAMTAHEIRFGENSQKVQTWRSALSEICQLKGLHISTTGFEINYIEVIVQEVYDYVKSLHVGQDQVEIEHSKEEETLKKEEEEKEDKAKEKEEDDLNTIIKSPRLIVPTEGNSEEKKLDVKKDIVAFNKESPAKDEKDTVQEMMNSSKREGEEIKEALDSSSRGDDPGDKTGSQEENVGSTNVTDNGTLKKGRWTEEEDAILVEYVKKHGDSTWHAIHKQTGLARSGSRCRDRWINHLKPGLKKGESFTEEEQQKIIRLHAKIGNKWVQMAQELPGRSENDIKNFWNTRRKRLERDGTPLYPADVIPQMLDSNQENRGCSSQHVDASSEDKLNFLKHQLNQEYPSYIPSISNIPKSRTSEHGSDSFNFPMLQPPDLVDDSDKLYNSLGSSSTSNTPPTLIDHHDMFQDYGFSNINPFYGKMHYKLPPFPSTEETQQVDESSDALIQCPPVEETWSKSVSPRRNGLLDSIFFTPTPSTDESSDTQIQLPPVEETQPESVSPHSSGLLESILFTLTPKNSEGSDTSSMHHSETERDKQGEPNSCNKKNSN* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00575 1062 FunFam Non-specific serine/threonine protein kinase 6 309 - -
Rops9g00575 1062 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Rops9g00575 1062 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Rops9g00575 1062 MobiDBLite consensus disorder prediction 643 686 - -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 584 613 - -
Rops9g00575 1062 Gene3D - 698 758 - -
Rops9g00575 1062 Pfam NAF domain 308 367 IPR004041 GO:0007165
Rops9g00575 1062 CDD CIPK_C 312 390 - -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 983 1036 - -
Rops9g00575 1062 SUPERFAMILY Protein kinase-like (PK-like) 9 269 IPR011009 -
Rops9g00575 1062 ProSiteProfiles Myb-like domain profile. 761 804 IPR001005 -
Rops9g00575 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 397 546 IPR035897 -
Rops9g00575 1062 SUPERFAMILY Homeodomain-like 703 800 IPR009057 -
Rops9g00575 1062 CDD STKc_SnRK3 12 267 - -
Rops9g00575 1062 Gene3D - 761 834 - -
Rops9g00575 1062 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Rops9g00575 1062 CDD SANT 761 802 IPR001005 -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 1037 1054 - -
Rops9g00575 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 399 572 - -
Rops9g00575 1062 Coils Coil 577 611 - -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 981 1062 - -
Rops9g00575 1062 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Rops9g00575 1062 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 700 756 IPR017930 -
Rops9g00575 1062 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 757 808 IPR017930 -
Rops9g00575 1062 ProSiteProfiles TIR domain profile. 401 541 IPR000157 GO:0007165
Rops9g00575 1062 Gene3D Kinase associated domain 1, KA1 305 398 - -
Rops9g00575 1062 SMART till_3 402 544 IPR000157 GO:0007165
Rops9g00575 1062 SMART sant 704 754 IPR001005 -
Rops9g00575 1062 SMART sant 758 806 IPR001005 -
Rops9g00575 1062 Pfam TIR domain 402 587 IPR000157 GO:0007165
Rops9g00575 1062 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00575 1062 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00575 1062 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00575 1062 FunFam Non-specific serine/threonine protein kinase 306 405 - -
Rops9g00575 1062 Pfam Myb-like DNA-binding domain 705 752 IPR001005 -
Rops9g00575 1062 Pfam Myb-like DNA-binding domain 761 802 IPR001005 -
Rops9g00575 1062 Gene3D - 399 578 IPR035897 -
Rops9g00575 1062 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Rops9g00575 1062 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 389 - -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 687 703 - -
Rops9g00575 1062 ProSiteProfiles Myb-like domain profile. 700 752 IPR001005 -
Rops9g00575 1062 CDD SANT 707 752 IPR001005 -
Rops9g00575 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Rops9g00575 1062 MobiDBLite consensus disorder prediction 584 627 - -
Rops9g00575 1062 MobiDBLite consensus disorder prediction 643 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00575 Rops-Chr9 8227469 8242355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00575 3 394 CBL-interacting serine-threonine protein kinases AT2G26980 84.949 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops9g00575 Pkinase 8.7e-72 CL0016
TF MYB Rops9g00575 Pkinase 8.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00575 - - gmx:100794566 754.977