Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00574 ATGGTAGCACAGAGTGTGGTTGTGATCCAAGATGCATCTAATGAAATAAATACAAGAATTTTTCATTGGGCTCTTCATGGCTTATCAATCAAGCCAGGAGATAAACTCACCCTTGTTGCAGTCCTACACCAGGTTATCACTCCTTTGGGGTACAAAATCAGCGTGGACAGCAGGTTAACTTTTGGAGCAAACCAGAATATTATTGAGGCACAAGCTGCAAGCAAAAAAGAAGAATATATGAAAAATGAGGAGCTTGTTCAGATTTATAAACTGTATAAATCAATGAAGGTTGGATTTAAAATTGAGCTAGCTATGGGATCTTCACCTAAGGCGGTTGCATTAAAATCAGCCACGAAGCTAAAGGCAACTTGGGTGATATTAGACAGGAAAATGAAGAATGATGAGGGGTATTTCCTTCAGAAGCTTTCTTGTGGCATATCAAGAATAAGGAGTTACAATAGAATTGTACGTTTAAGAGGACCACTAGATCACCCTCAAGATACACGACGATATAGCAGCTCTGAAATATATGCTGAAAGTATACCACTACAAGACATTTCAACTGAACTGGATCTTTTCAGCATTGACATCTCCCCCAAAAGTCATGTAAAAAATTATCAGATGAACCAGGAACAAGGACAGAGACAAAGGAGCCCCTATGATGAAGCAGGGTGCTCAACACTTGACAGTGATGAAACAGGAGAGATAAGTCCTTATCAACTAAGCAAGGATAAAAAGGACAACAACTATGGTAAGCAATTGAAACAGAAAGAATACAGGCACGATGGGGATGAGAGGGACCAAAAACTGAAACAGAAGTTAAAAGAGAATAATAGGAAAACACATGCACAGGAAAGCTTAAGCACCAAGGTGTATCAGAAAAGTGAAAGATACTTAAGTTCTGGTGGAGCTAGGAACTTTTATCTTGGAGGGGCTGAAGAATATACAGATGATGATAATCAAGAAAGGTCAAATCTTCCTAAGAAATCGAAAAAGACAGAGAAGATGAACAGATTACCTTTTGATGATAAACTAAAGGGTAATGATCATGATGAGACAAGTGAGAAACCAACTTCAAGAATCCATATGTGTGAGTATTGTGGTAGGAAGTTTCCCTCTGGAAAATCATTAGGTGGCCACAAAAGATCACACTCTGAAGCTCTAAGGAAAGAAGATCATCAGGCTAATAATAAGGCTAATTGTAATGACATCAAGTCTTTTGATAAGAAACAAAGTTGTCTTATTTGCAATAAGGATTTCCCATCCTCCAAATCCTTGTATGGACACATGAAATCCCATCCTGATAGGCTCTGGAGAGGTATTCACCCTCCTGTACCCTATGACGACTCCGACTCCATTGAAGAGAATGAAGATGATGATGATGATCAAATTTTTAGTGATGCATCAAAATCTTTGCCACCAAGCTGGCATAAGACTGATAAACGAGGTAGACAATGGATTTGTAGCCATGATGTCATCAATGCTGCTCAAATACTTATGTCTATGTCACAGGATAAGTGGTCACATGACATGTATCCTGAATTACCTCAACATGCTAACCTCAATGAGGATGCATATTGTGATACACTTGATGGAGGAAAGTATTTGTGCAAAAAATTTGGGGAAGAGAAAGTTTTAGTGAATATGGATAATGAGGAGGAAGAAAAAGAATATGAGAATGCTAATTGCACTAAAGTGGAGTGTTGTATGAAGAATATAAAAGGAGCATCAAATGGTATAAATGCTAAAGTAATATCTAGTGCTAGTAAGTTGCAAGATCATGTTAGTGATGTTGATGAAACGGTGGAGATGATGAAGAAGAAGAACAAAAATAGAATTAAGTTGACAGTGAAATGTAAGAATCCGTATTCAGAATCTAAAAATGAGATCCTACAAACACAAGATGATTATCAAGATAAAGCTTTTTCACCAATACAAGTCAAAGGAGGACACAAATCAAGTCACAAATCTAATAGTGAAGCAAGTCAATCAGGCTCAAGAATTCTGAATTTTGATCTGAATGAGCCACCGAATGTTATGAAGGATGAAACAAATTAG 2058 0.3741 MVAQSVVVIQDASNEINTRIFHWALHGLSIKPGDKLTLVAVLHQVITPLGYKISVDSRLTFGANQNIIEAQAASKKEEYMKNEELVQIYKLYKSMKVGFKIELAMGSSPKAVALKSATKLKATWVILDRKMKNDEGYFLQKLSCGISRIRSYNRIVRLRGPLDHPQDTRRYSSSEIYAESIPLQDISTELDLFSIDISPKSHVKNYQMNQEQGQRQRSPYDEAGCSTLDSDETGEISPYQLSKDKKDNNYGKQLKQKEYRHDGDERDQKLKQKLKENNRKTHAQESLSTKVYQKSERYLSSGGARNFYLGGAEEYTDDDNQERSNLPKKSKKTEKMNRLPFDDKLKGNDHDETSEKPTSRIHMCEYCGRKFPSGKSLGGHKRSHSEALRKEDHQANNKANCNDIKSFDKKQSCLICNKDFPSSKSLYGHMKSHPDRLWRGIHPPVPYDDSDSIEENEDDDDDQIFSDASKSLPPSWHKTDKRGRQWICSHDVINAAQILMSMSQDKWSHDMYPELPQHANLNEDAYCDTLDGGKYLCKKFGEEKVLVNMDNEEEEKEYENANCTKVECCMKNIKGASNGINAKVISSASKLQDHVSDVDETVEMMKKKNKNRIKLTVKCKNPYSESKNEILQTQDDYQDKAFSPIQVKGGHKSSHKSNSEASQSGSRILNFDLNEPPNVMKDETN* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00574 685 Gene3D Classic Zinc Finger 359 433 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 375 396 - -
Rops9g00574 685 SUPERFAMILY beta-beta-alpha zinc fingers 360 433 IPR036236 -
Rops9g00574 685 SMART c2h2final6 362 384 IPR013087 -
Rops9g00574 685 SMART c2h2final6 411 433 IPR013087 -
Rops9g00574 685 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 433 IPR013087 -
Rops9g00574 685 MobiDBLite consensus disorder prediction 312 358 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 206 267 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 238 267 - -
Rops9g00574 685 ProSiteProfiles Zinc finger C2H2 type domain profile. 362 385 IPR013087 -
Rops9g00574 685 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 393 683 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 206 223 - -
Rops9g00574 685 ProSitePatterns Zinc finger C2H2 type domain signature. 364 384 IPR013087 -
Rops9g00574 685 MobiDBLite consensus disorder prediction 650 671 - -
Rops9g00574 685 Pfam C2H2-type zinc finger 362 385 - -
Rops9g00574 685 Pfam C2H2-type zinc finger 413 435 - -
Rops9g00574 685 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
Rops9g00574 685 MobiDBLite consensus disorder prediction 634 685 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 379 396 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 435 479 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 316 358 - -
Rops9g00574 685 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00574 Rops-Chr9 8209070 8216357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00574 360 446 C2H2 Transcription Factor Family AT2G26940 33.036 5.42e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g00574 zf-C2H2_6 5.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00574 - - mtr:11446041 365.54