Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00573 ATGGCCGTTACTTTCTCAGATCTACACACTGAGGGGGGTCTCAAATCCCTTGATGAATTCCTCTCCGGGAAGACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTTTGGAAACACCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCACAGCTTGCTGCAAGCTTCCCTGGGAATGCTCAAGGGGTAAAATTCAGTCGCAATGCTGCTCCTGCTGTTCCTGCTGCACCAGCCAAAGCGGATGCTGCTGCGGAAGATGATGATGATCTTGATCTCTTTGGTGATGAAACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGACTACCAAGAAGAAAGAAAGTGGCAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGACGACGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGTGTTCAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGCTGCAGATCATGATGACTATTGTTGATGACCTTGTTTCTGTGGACACTCTCATTGAGGAACACCTGACAGTTGAGCCATGCAATGAATATATCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 672 0.4613 MAVTFSDLHTEGGLKSLDEFLSGKTYISGDQLTKDDIKVYAAVLETPGDSFPNAAKWYDVVSSQLAASFPGNAQGVKFSRNAAPAVPAAPAKADAAAEDDDDLDLFGDETEEDKKAAEEREAAKKTTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAFNKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00573 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Rops9g00573 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Rops9g00573 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Rops9g00573 223 Gene3D - 3 75 - -
Rops9g00573 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops9g00573 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 223 - -
Rops9g00573 223 FunFam Elongation factor 1-beta 1 like 128 223 - -
Rops9g00573 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Rops9g00573 223 Gene3D - 127 223 IPR014717 -
Rops9g00573 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Rops9g00573 223 SUPERFAMILY GST C-terminal domain-like 11 66 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00573 Rops-Chr9 8200427 8205010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00573 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 76.316 1.47e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00573 K03232 - gmx:100500082 325.865