Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00572 ATGTCAAGTGGAGCAACGCACTGGTGTTATGCTTGCAATCAGCCAATCGTGCTTGAAGGGAGTGATGTTGTTTGCCCTTACTGTGATGGAGGATTTGTACAGGAACTTAATGAGATGCAAGGTGGTGCACCCCAATATACCTTTTCTTCACAGTCAGGAGAGTTTCATCAAATGCCTGACATTTTTGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGAACAGAGGTTTGGTCTTATAGATGCTGTTGAAAATTTCATGAGACATAGAATGGCTGGAAGACACCCAAACTTCGATGTTAGAGGGAGGTCTGGTTCAGTTCCGGTTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACGTTGTCTCATGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGACTACATGATGGGTCCTGGGCTCGAAGAACTTATTGAACAACTCACCATGAATGATCGACATGGTCCACCCCCGGCTGCTCGATCTTCAATTGATGCAATGCCTACTATTAAGATCACACAAGCACATCTTCGTTCAGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAACTGGGCTCTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGTTAGTTCTCGTGGTAGTCGAAGTTGGGGAGGTAGGAATGCCAACAGCAGCAGTGGCAATGATAGCTCCAGGGGCAGGGAGAATAACCATCAGAGCCAAGGAAGGAGGAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAATAATCATTATGCCGAAACTGGGGGAAGCAGCTCTTCAACCCCTCCTGACCAGAATAATGGAAGAAGTCATAGTGGATGGCCCTTTGACAACTAA 996 0.4538 MSSGATHWCYACNQPIVLEGSDVVCPYCDGGFVQELNEMQGGAPQYTFSSQSGEFHQMPDIFDAIHAFMGQRGSEQRFGLIDAVENFMRHRMAGRHPNFDVRGRSGSVPVPEQSWGVFSSGPYLIFHGQVPGFTLSHGSPRGGPRRVDFGDYMMGPGLEELIEQLTMNDRHGPPPAARSSIDAMPTIKITQAHLRSDSHCPVCKERFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHVSSRGSRSWGGRNANSSSGNDSSRGRENNHQSQGRRNPLSFLWPFRSSSSNNNHYAETGGSSSSTPPDQNNGRSHSGWPFDN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00572 331 SMART ring_2 200 240 IPR001841 -
Rops9g00572 331 MobiDBLite consensus disorder prediction 248 331 - -
Rops9g00572 331 Pfam Ring finger domain 199 241 IPR001841 -
Rops9g00572 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Rops9g00572 331 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Rops9g00572 331 SUPERFAMILY RING/U-box 180 247 - -
Rops9g00572 331 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Rops9g00572 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 245 - -
Rops9g00572 331 MobiDBLite consensus disorder prediction 250 331 - -
Rops9g00572 331 CDD RING-H2_RNF126-like 200 241 - -
Rops9g00572 331 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00572 Rops-Chr9 8193486 8196029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00572 144 256 C3H Transcription Factor Family AT5G01980 42.609 1.18e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00572 K11982 - gmx:100813674 591.267