Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00568 ATGGGTGAAGCTTTGGAATATGAAGAACGACCTAAATACAGAGATATTAGACTATTTTTGCCATTACCGTGGAATCTGCAGATCCAAAAAGACCCTTATTACCTCTCACATCAATTCACTCCACAAGTTAACTTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTAAGAGCCCATGTTAACTCATGCCATCAATATGAGACATGTGGCACTTGTGGGACTAAGCAACTAAAGAAGAATATTAAGAGCACACATGAATCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTAAATCTAATCTTCACAAGCATGAGAAGGTTGTGCACTTCAAAGAAAAGCTTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGATAAAACTGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGAGGTCACCAGGGGAGGGAAGAAGAGAAAATATCCTACTGTTGA 573 0.3979 MGEALEYEERPKYRDIRLFLPLPWNLQIQKDPYYLSHQFTPQVNLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYETCGTCGTKQLKKNIKSTHESSSSSETFKCEFKGCDCTFSSKSNLHKHEKVVHFKEKLFVCGFDGCGMRFAYKHVRDNHDKTGKHVFTLGDFEEADEEFRGHQGREEEKISYC* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00568 190 ProSitePatterns Zinc finger C2H2 type domain signature. 107 130 IPR013087 -
Rops9g00568 190 ProSitePatterns Zinc finger C2H2 type domain signature. 52 75 IPR013087 -
Rops9g00568 190 SMART c2h2final6 50 75 IPR013087 -
Rops9g00568 190 SMART c2h2final6 136 162 IPR013087 -
Rops9g00568 190 SMART c2h2final6 105 130 IPR013087 -
Rops9g00568 190 SUPERFAMILY beta-beta-alpha zinc fingers 100 143 IPR036236 -
Rops9g00568 190 Gene3D Classic Zinc Finger 100 165 - -
Rops9g00568 190 ProSitePatterns Zinc finger C2H2 type domain signature. 138 162 IPR013087 -
Rops9g00568 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 135 IPR013087 -
Rops9g00568 190 PANTHER ZINC FINGER PROTEIN 36 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00568 Rops-Chr9 8122542 8124929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00568 32 165 C2H2 Transcription Factor Family AT1G72050 54.745 2.17e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g00568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00568 K09191 - gmx:100801812 222.631