Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00543 ATGGCTTCTAGAGCTATTGTTCCACAGGAACAACAACCCAGAGGTGAGAATAAACAAAAGAATGTAGCAGCAGAAGGAAGAGACAGAAGGGCACTCAAGGATATTGGTAATCTTGTGGTTAAACAAGCAGAGCCTGGTGCTAATGTGTCTAAGCGCAACACAAGGAACTTTGGTGCTCAATTATTGGCTACTGGGCAAGCCGCAGCAGAGAAAGACAAGAAGTCAAGCACTGCTGAACTTATTATTGATGGTGCACTTGTAGCAGCCAATGGGGTTAGTGTAGGGAATTTTATTGCTGCAACAAAGATGGAACCAGCTCAGAAGCCAACAGAAACTGAGATTATTGTAATCAGCTCTGATGATGAATCTGAAGAAGAGAAGGAGAAACAAGCTGTCAAAGGTAAAAAGACAAGAGATAGGTCAGCCATGAAAAATGGCAAGGCTTTCAGTTCAGTCCTCACTGCTAGAAGCAAGGCTGCTTGTGGACTTGCTTATAAGCCAAAGGTTTTGGTAGTGAACATTGATGCAACTGACATGGACAATGAATTGGCAGCAACTGAGTACATTGATGACATCTACAAGTATTACAAACTCACTGAAGATGATGGTCGTGTACATGATTACATGAGTTCACAGCCAGATATAAATGCCAAGATGAGAACAATCCTTGTGGACTGGTTGATAGAAGTGCATCGAAAATTCGAGCTCATGCCAGAAACTCTCTATCTGACCCTAAACATTGTAGACCGGTTCTTGTCTGTGAAGGCTGTGCCTAGAAAGGAACTTCAGCTGCTTGGTATCAGCTCAATGCTGATAGCTTCTAAATATGAAGAGATATGGGCACCAGAGGTCAATGACTTTGTATGCATATCAGACAATGCCTACGCTGCAGAACAGGTTCTGGTCATGGAGAAAACAATCTTGGGAAAGCTTGAATGGTATTTAACCGTTCCCACACCTTATGTCTTCCTGGTTCGATATATCAAAGCCTCTACTCCCTCTGATAAAGAGATGGAAAATATGGTGTTTTTCCTTGCTGAACTTGGTGTGATGCACTATCCTATTGTAGCCATGTACTGCCCTTCTGTGATTGCTGCTTCTGCTGTATATGCGGCAAGATGTACCCTTGAAAGGAGCCCTTTCTGGACTGAGACTCTAAAGCACTACACAGGTTACTCAGAGGAACAACTAAGGGATTGTGCCAAACTCATGGTCAACTTTCATTCTACTGCCCCAGAAAGTAAGCTAAGGGCAGTTTACAAGAAATTCTGTAGCTCGGATCGTTGTGCTGTTGCCCTTCTTGCTCCAGCCAAAAACTTGTCAGCACAGTCTTGA 1335 0.433 MASRAIVPQEQQPRGENKQKNVAAEGRDRRALKDIGNLVVKQAEPGANVSKRNTRNFGAQLLATGQAAAEKDKKSSTAELIIDGALVAANGVSVGNFIAATKMEPAQKPTETEIIVISSDDESEEEKEKQAVKGKKTRDRSAMKNGKAFSSVLTARSKAACGLAYKPKVLVVNIDATDMDNELAATEYIDDIYKYYKLTEDDGRVHDYMSSQPDINAKMRTILVDWLIEVHRKFELMPETLYLTLNIVDRFLSVKAVPRKELQLLGISSMLIASKYEEIWAPEVNDFVCISDNAYAAEQVLVMEKTILGKLEWYLTVPTPYVFLVRYIKASTPSDKEMENMVFFLAELGVMHYPIVAMYCPSVIAASAVYAARCTLERSPFWTETLKHYTGYSEEQLRDCAKLMVNFHSTAPESKLRAVYKKFCSSDRCAVALLAPAKNLSAQS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00543 444 Pfam Cyclin, C-terminal domain 318 435 IPR004367 -
Rops9g00543 444 PANTHER CYCLINS 130 422 IPR039361 -
Rops9g00543 444 Gene3D - 205 316 - -
Rops9g00543 444 Pfam Cyclin, N-terminal domain 191 315 IPR006671 -
Rops9g00543 444 SMART cyclin_7 322 406 IPR013763 -
Rops9g00543 444 SMART cyclin_7 225 309 IPR013763 -
Rops9g00543 444 FunFam G2/mitotic-specific cyclin 204 311 - -
Rops9g00543 444 CDD CYCLIN_AtCycB-like_rpt2 318 436 - -
Rops9g00543 444 SMART Cyclin_C_2 318 437 IPR004367 -
Rops9g00543 444 FunFam G2/mitotic-specific cyclin-1 312 432 - -
Rops9g00543 444 SUPERFAMILY Cyclin-like 180 315 IPR036915 -
Rops9g00543 444 MobiDBLite consensus disorder prediction 122 142 - -
Rops9g00543 444 PIRSF Cyclin_A_B_D_E 2 444 IPR046965 GO:0016538|GO:0044772
Rops9g00543 444 MobiDBLite consensus disorder prediction 119 142 - -
Rops9g00543 444 MobiDBLite consensus disorder prediction 1 28 - -
Rops9g00543 444 CDD CYCLIN_AtCycB-like_rpt1 171 313 - -
Rops9g00543 444 SUPERFAMILY Cyclin-like 319 439 IPR036915 -
Rops9g00543 444 ProSitePatterns Cyclins signature. 220 251 IPR006671 -
Rops9g00543 444 Gene3D - 191 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00543 Rops-Chr9 7787458 7790440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00543 1 441 Core Cell Cycle Gene Families AT2G26760 50.676 6.04e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00543 K21777 - gmx:547782 629.787