Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00506 ATGCTCAGTGGCGCTGGAAGATCTCACACCGCCGTGGCAACTGATGCCCATTACCCCAATGGTCGGTGGCTATGTTTTGATGATGCATCTGTCTTTGCTGTTGGAAGAGGACTTTGCTTGAGACCCCACACGAATAACACCCACATTAGATACACCCGTATAGTATATATTTACAGATTGCCTTCCAAGTTGATCAGAACAACAGAAGATCAATTCCACCTTTATTCACAGAGGTTGCCTTCAGATTCTGGTGCCTTTGCTGATTGGGCAGCAACTTCCTCCGCCGGCCGTGCTGCCCCCGACGACCTCTCCCTTGGCTTCAATGCAGGCACCGGAGCCACCACCGGAACATGGTCCGGCGCCACTAGGTCAATCAATTACGGTGTTGCCCCTGAGATGGGAATGTTTGTGGTGGCACCAGCTTCGTCCTTTCACCATCAACAGCAACACGTGCAGGACCCTCTCTTGTCCGATCCTCATTCCTTGAATCCCGCCACCGCACTCGGCGTCGGTGTTATCCCTCTTCTCACCGTTGACCACGACAACAACCGGAGACAATCGGGAATTCAGTTTTGGCAGGAGCAGCAACCTCATCCATGCCACTACTTGAAGAAGCAGGCTTTGTTAGATCATAACACTGCTTCCGGGAATGCGAATTTGGTTCAAGGAGGTGGTGGTGGTGGGATAACTGCTACTTCCACAAGTAGTGGAGGAACAACGTGCCAAGATTGTGGAAACCAAGCCAAGAAAGATTGTACTAATAGAAGGTGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAAAGCACTTGGGTCCCAGCCTCAAGGCGGAGAGAACGGCAGCTTATGGCAGCGGCAGCGGCGGTTGCTGGTTCCACGGGATCTTCTTCCGGTACCAAGAAACCTAGGCTCATTACTTCACAAACTACCACTACTTCTCATACTTCCACTTCTAACACCACTCCTCCTAGGAGCTTTGACACTAGCTCTAGCCATCAAGATGCAAGTTTTAAAGAGTCATTGCCTGGTCAAGTACGTGCACCGGCGGTATTCAAGTGTGTAAGAGTGACGGCGGTTGAAGATGGGAGGGATGAGTATGCCTATGAAGCTGTTGTGAAGATTGGTGGCCATGTTTTTAAAGGTTTTCTTCATGATCAGGGTGTGGAGAATAGAGATGTGTATCCTAATCTATCTGAGTTGCATTTGGGTGGAAGTGGAAGTGGAGCTGGGAGAAATGGGGTGTCATCTTCATCTCCTATGGTGGATCCTTCTGATGTTTATGCAGCATCAGCTGGAGGGTTACTGGGAGGTTCAACTTATGGTAATGCAATAAATTGA 1353 0.4915 MLSGAGRSHTAVATDAHYPNGRWLCFDDASVFAVGRGLCLRPHTNNTHIRYTRIVYIYRLPSKLIRTTEDQFHLYSQRLPSDSGAFADWAATSSAGRAAPDDLSLGFNAGTGATTGTWSGATRSINYGVAPEMGMFVVAPASSFHHQQQHVQDPLLSDPHSLNPATALGVGVIPLLTVDHDNNRRQSGIQFWQEQQPHPCHYLKKQALLDHNTASGNANLVQGGGGGGITATSTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPASRRRERQLMAAAAAVAGSTGSSSGTKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKESLPGQVRAPAVFKCVRVTAVEDGRDEYAYEAVVKIGGHVFKGFLHDQGVENRDVYPNLSELHLGGSGSGAGRNGVSSSSPMVDPSDVYAASAGGLLGGSTYGNAIN* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00506 450 MobiDBLite consensus disorder prediction 295 343 - -
Rops9g00506 450 NCBIfam LRP1 C-terminal domain 346 393 IPR006511 -
Rops9g00506 450 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 144 435 IPR007818 GO:0003700|GO:0006355
Rops9g00506 450 NCBIfam putative zinc finger domain, LRP1 type 240 282 IPR006510 -
Rops9g00506 450 MobiDBLite consensus disorder prediction 288 345 - -
Rops9g00506 450 Pfam Domain of unknown function (DUF702) 238 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00506 Rops-Chr9 7250106 7255735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00506 79 431 C2H2 Transcription Factor Family AT5G12330 50.515 2.54e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops9g00506 DUF702 1.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00506 - - gmx:100817745 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00506 9 7250106 7255735 Rops9g00506 9 7250106 7255735 ECH