Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00495 ATGTTTGTCGGAGGAGGAGGTAGAAAGGTGAGAGAGTTGCTAGCTCTTCCTTCCTTCATCGCCGTTTGGATTCGATCATTGCGTAGTGATTCGGTATCGAAATTAGGTTTTCAGATTGCGGATTTAGTCTCACATGGTGTAATGGAAGATAAAGGCCAAGGACAGGATGATAATAGAGTCCATAGATCAGTAGGTAATGAATGTACTGATGCAATTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTACGAGAGTGATGTGGAACCAGATGGTGCCTGTACACTACAAAACGAGGCAACAGCTGATGATGGAGATGCTACAAAAGAATCTAACTTACAGACTGCTGGTAGTAAAACAGCTGTGGTTGGAAGATGGGGTTCAACATTTTGGAAGGACTGCCGACCAATGTGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGAATATAGAAATGGAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGTGGGAAGATTAGACTCAGAAGATGATGATGTACAAAAGGAGGCAGGTAAAGGTCCAAGAGGCCATTCTGATGTTCCAGCAGAAGAGATGTTGTCCGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTATAGTGAGATTCATAGGCCCACTGGATTGAATTCGGGGCCTCAACGGATGTCTACTACTGTTAATAGAACTGTGCATAGGAAATCTAGGATCCTAGACGATGCTGAAGATGATGACGTTGATGATGGTGATGGTGATTATGAAGAGGAGGATGGAGCAGATGAAGATGATCCTGATGATGCAGATTTTGAACCTTCCACAACTGGTCACACTGCAAACAAGGATAAGGATTGGGAAGGTGAAGGCTCAGATGAAGATGGCGATAGTGACGAAAATTTAGATGTTTCAGATGATGATGAATCCTTCTATGCTAAAAAACCTAAGGGAAGGCAACGAGGTAAGGTTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCATATGCTGCATCTGGTAGACAAAGAAGAGCCAAATCATCTTTTGAAGACAATGAGTCAACAACAGAGGATTCTGACGGTGATAGTGATGAGGATTTCAGAAGTACAAAAAGGAGAAATCTTCATGTCCGCAAGAATAATGGTCGCTCATCTGTAGCCTCAAGTTTTTCTATGCGCAACAGTGAGGTTCGCACTTCTAGTAGGGCGGTTAGGAAGGTATCATATGTTGAAAGTGACGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGCCCCAAAAGGAAGAAATTGAAGAGGATGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACTGAGCCGGTTTTAATGAGCCATTTATTTGATTCTGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCTCATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAGAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGTAAAGATAATTCTGGCAACGTTATTCCAGAATACCTGGTCAAGTGGCAAGGACTGTCTTATGCTGAAGCGACTTGGGAAAAGGATGTTGATATTGCTTTTGCTCAACATGCAATTGATGAGTTTAAGGCTCGTGAGGCTGCAATGTCAGTTCCAGGAAAGGCGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGACTGAATTTTCTTGTCAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCTGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCATTGTCTACTTTATCGAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGGACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATGATGATAAAAAGCCTGGGAAACCAATAAATTTCAATGCGCTGTTGACTACATATGAGGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAGATCAAATGGAATTATCTGATGGTTGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTATACAGCACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTGACAAGTTCAAGAGCAAGGACGATTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCGAATCTTCATATGGAATTGAGACCTCACATACTTCGGAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCAAAAATAGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAAAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCATAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGTTGCAATCATCCCTTCCTTTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGACGCAGTGACAACAGTAAAATAGAGAGAATTGTCTTCAGCAGTGGAAAGCTTGTCATCCTTGATAAGCTGCTTGTTAGATTGCATGAAACGAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTAGCAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGCACAAAAGCTGAGCTTAGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTGGGTATCAACCTTGCCACGGCAGACACTGTCATAATATTTGACTCAGATTGGAATCCTCAAAATGACCTACAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTAACAAGCAAAAGCGTTGAGGAAGATATTCTGGAACGTGCTAAAAAGAAGATGGTTTTGGACCACCTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAAAAACGACTCTTAAGTATGGATATTGATGAGATTCTTGAAAGAGCGGAGAAGGTTGAAGAGAAGGAAGCTGATGGAGAACAAGGAAACGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGTAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGCAGAGGCTGATCCACCTGAAAGAAGTAATAAAAGGAAAAAAAAGGAACCTGAACTGCCTGAAAGAGTTCAGAAACGCCGGAAAGCAGAGAATTCAGCTCCTTCAGTGCCAATGATCGAGGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGAAATTTATCTAAAAGAGACGCACTCCGTTTTTCTCGTTCGGTTATAAAATATGGGAATGAGAACCAACTCGACTTAATTGTTGCTGAGGTTGGTGGTGCAGTTGAGGCAGCTCCACCTGAAGCACAGATTGAACTTTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTGGAACTTGGAAATTTTGATCTGAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTTCCCGTGTCCAAGAACTTCAACTCCTAGCAAGGCGCATTAGTCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTCAAACCTTCAAACTGGTCGAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTTCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAAAGATTAGATTAGACGAAAGGCTTGGCCTTATGAAAAAAATTGCACCTGTTGAACTTCAACACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTTTGGAGCAAGAGCTTGCTGTTCTTGGTATAAAAAATGCCAATACCAGAGTCGGACGGAAGCCTTCCAAGAAAGAGAGAGAACATATGATTAACATCTCATTGTCGCGTGGGCAGGAGAAGAAGAAAAAATTGGGTCCTGTTAAAGTTAATGCCCCCATGAGAAAGGATAGATTTCAGAAACCCCAAAAGGTTGAACCTATTGTAAAAGAGGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGACGGATAGATCAAATTGTCTTAGAACATGAACGGGAACCCTATAAGCAAGATAGAATGACCGTGCGACTGTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAAGAAGATGAGGCTGGGGTTGGCCCTTCTCATGTCAATGGGTCAGTATCTGTTTCATTTAACCGAAATGGAAACCCAATCCGGGGCCATATGGAGAGGCAAAGAGGATTGAAAAATATGACTACCTACCAAATGCCAGAACCAGTTAATAATACTGGGAAATCTGAGGCTTGGAAACGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCGCCACCTCAACGAACCATGAGTAATGGAATCCAAATTAATGACCCTAACTCGCTTGGCATCCTCGGCGCTGGACCATCTGACAAACGCTTTGTTAGTGAGAAACCTTATAGGACACCACCTGGTGGGTTTCCTTCAAAACAAGGCTTCTCTTCAGGTATAAGGTGA 5373 0.4147 MFVGGGGRKVRELLALPSFIAVWIRSLRSDSVSKLGFQIADLVSHGVMEDKGQGQDDNRVHRSVGNECTDAISSEKEFDMNMEAQYESDVEPDGACTLQNEATADDGDATKESNLQTAGSKTAVVGRWGSTFWKDCRPMCPQNGSESGQESKSGSEYRNGDGSEDNSLDGRVGRLDSEDDDVQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYSEIHRPTGLNSGPQRMSTTVNRTVHRKSRILDDAEDDDVDDGDGDYEEEDGADEDDPDDADFEPSTTGHTANKDKDWEGEGSDEDGDSDENLDVSDDDESFYAKKPKGRQRGKVGQSIKSTRDRKAYAASGRQRRAKSSFEDNESTTEDSDGDSDEDFRSTKRRNLHVRKNNGRSSVASSFSMRNSEVRTSSRAVRKVSYVESDESEEADEGKKKKPQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQHAIDEFKAREAAMSVPGKAVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKPGKPINFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGRSDNSKIERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEAAEADPPERSNKRKKKEPELPERVQKRRKAENSAPSVPMIEGASVQVRSWSYGNLSKRDALRFSRSVIKYGNENQLDLIVAEVGGAVEAAPPEAQIELFNALIDGCTEAVELGNFDLKGPLLDFFGVPVKANDLLSRVQELQLLARRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARFLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGIKNANTRVGRKPSKKEREHMINISLSRGQEKKKKLGPVKVNAPMRKDRFQKPQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEREPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDEAGVGPSHVNGSVSVSFNRNGNPIRGHMERQRGLKNMTTYQMPEPVNNTGKSEAWKRRRSESDDHFQGQPPPQRTMSNGIQINDPNSLGILGAGPSDKRFVSEKPYRTPPGGFPSKQGFSSGIR* 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00495 1790 MobiDBLite consensus disorder prediction 142 156 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 391 417 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1247 1275 - -
Rops9g00495 1790 CDD CD1_tandem 446 526 - -
Rops9g00495 1790 FunFam protein CHROMATIN REMODELING 5 isoform X2 563 615 - -
Rops9g00495 1790 SUPERFAMILY Chromo domain-like 540 616 IPR016197 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 300 316 - -
Rops9g00495 1790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 874 IPR027417 -
Rops9g00495 1790 SMART ultradead3 649 848 IPR014001 -
Rops9g00495 1790 Coils Coil 1113 1133 - -
Rops9g00495 1790 SMART DUF4208_2 1555 1660 IPR025260 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1706 1790 - -
Rops9g00495 1790 FunFam Photoperiod-independent early flowering 1 624 897 - -
Rops9g00495 1790 FunFam Chromo domain-containing protein 1 436 561 - -
Rops9g00495 1790 CDD CD2_tandem 559 615 - -
Rops9g00495 1790 Coils Coil 1167 1187 - -
Rops9g00495 1790 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 665 837 IPR014001 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 157 200 - -
Rops9g00495 1790 Pfam Domain of unknown function (DUF4208) 1567 1659 IPR025260 -
Rops9g00495 1790 Pfam SNF2-related domain 672 941 IPR000330 GO:0005524|GO:0140658
Rops9g00495 1790 SMART chromo_7 559 618 IPR000953 -
Rops9g00495 1790 SMART chromo_7 446 529 IPR000953 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 227 244 - -
Rops9g00495 1790 Gene3D - 434 560 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1664 1692 - -
Rops9g00495 1790 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 884 1114 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 418 450 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1717 1731 - -
Rops9g00495 1790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 1159 IPR027417 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 254 281 - -
Rops9g00495 1790 ProSiteProfiles Chromo and chromo shadow domain profile. 561 625 IPR000953 -
Rops9g00495 1790 Pfam Helicase conserved C-terminal domain 970 1083 IPR001650 -
Rops9g00495 1790 CDD SF2_C_SNF 959 1094 - -
Rops9g00495 1790 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 973 1124 IPR001650 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 336 364 - -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 139 450 - -
Rops9g00495 1790 Gene3D - 644 883 IPR038718 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1732 1751 - -
Rops9g00495 1790 SUPERFAMILY Chromo domain-like 445 528 IPR016197 -
Rops9g00495 1790 MobiDBLite consensus disorder prediction 1244 1282 - -
Rops9g00495 1790 ProSiteProfiles Chromo and chromo shadow domain profile. 448 536 IPR000953 -
Rops9g00495 1790 SMART helicmild6 999 1083 IPR001650 -
Rops9g00495 1790 Pfam Chromo (CHRromatin Organisation MOdifier) domain 562 616 IPR023780 -
Rops9g00495 1790 Gene3D - 563 615 - -
Rops9g00495 1790 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 273 1721 - -
Rops9g00495 1790 Gene3D - 884 1114 IPR027417 -
Rops9g00495 1790 Gene3D - 1383 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00495 Rops-Chr9 7069208 7089611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00495 675 1110 RAD5 or RAD16-like Gene Family AT1G02670 26.337 4.32e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops9g00495 SNF2_N 3.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00495 K11367 - gmx:100808039 3058.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00495 9 7069208 7089611 Rops9g00495 9 7069208 7089611 ECH