Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00493 ATGCTTACCACAATCCTCAGAAGAGCTTGTTCCTCCCTCTCAAGGCGCGCCATCCCCGCCGCCTTAATCTCCGCCGACACCGTTCTCCCCTCCACCGTCGGCGGTGAGCTCCGACGACTCTCCTCCGTCATCAAATCGAGAACCTTCCACACTACCCAGGGACCCTTGCATTTCCGAGCCTCCTTGGCTTCTCGTGTTGAATATGCCGTTGAAGATTTTGCATACGAAGAAGGATCCAAAGGGAACAACGATGAAGGCCTCGAGATCGCGAAGCTTGGAATTTCCGAGGATATTGTTACTGCTTTGGCGAAGAAAGGCATCACCAAGCTCTTCCCAATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTAAGTTTAATGCTAAGCATGGACGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCTAAGCAGGTTGAAAAGGAATTCTATGAGTCAGCGCCTAACTTGGATACCATCTGTGTTTATGGGGGTACACCCATTTCTAAACAGATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTTGGCACGCCTGGTCGAATTATTGACCTTCTCAACCGAGGTTCTCTAAATTTGAAGGATGTTCAGTTTGTCATTCTTGACGAAGCTGATCAGATGCTTCAAGTCGGCTTCCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAATCGACAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAAATTACACGCAATTACCTAAAAAATCCACTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTTGCAGATGGAATTGCACTGTACTCAATTGCGTCTGATCTGTATGTTAAGGCGGGAATTCTTGCTCCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCGCATGCCATGGCAAAAAGTCTTCAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGCGGGAACAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTATAATACATTATGATCTTCCCAATTCTTCGGAGATATTTGTTCATCGATCAGGACGAACAGGTCGTGCTGGAAAGAAAGGAACAGCTATTCTTGTTTATACGGAAGATCAAACCAGGGCTGTTAGGACTATTGAACGTGATGTAGGCTGTAGATTTAAAGAGCTACCAAGGATCGCTGTTGATAGCGGAGCAGTGGACTCGATGGGTGGCGGGCGATTTGGTTCTTTTGGAGGTACAAGGGATCGTCGATATGGTGATGGAGGTTTTGGCCGTGGTCCTGGGGGTTACAGTAAACCTGGATCTGGCCGCTCTAGCTTTGGAAATTCTGGTGAAAGGTTTGGTGGGCCAAATTATAATCGTTTTGGTGGCTCTGGTTCGAGTCAATCAGGAGGGAGATTTTCTGGTAATTCATCTGATGAAATGAATAGATATGGGGGACCAAAGTCTGGCCGTTATGGCTCCTTTGGTGCCTCTGGTTCAGGTCAATCGGGAAGTAGATCTGGTGGATCATCCAGTGGATTTAATTTCGGTCGATCAGGTGGTTTTGGTGGTTCAGATCGCTCTGGTGATTTTGGATCAGGCATGTAG 1794 0.461 MLTTILRRACSSLSRRAIPAALISADTVLPSTVGGELRRLSSVIKSRTFHTTQGPLHFRASLASRVEYAVEDFAYEEGSKGNNDEGLEIAKLGISEDIVTALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIKFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVILDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQITRNYLKNPLTIDLVGDSDQKLADGIALYSIASDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSHAMAKSLQCEALHGDISQAQREQTLAGFRNGHFNVLVATDVASRGLDIPNVDLIIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQTRAVRTIERDVGCRFKELPRIAVDSGAVDSMGGGRFGSFGGTRDRRYGDGGFGRGPGGYSKPGSGRSSFGNSGERFGGPNYNRFGGSGSSQSGGRFSGNSSDEMNRYGGPKSGRYGSFGASGSGQSGSRSGGSSSGFNFGRSGGFGGSDRSGDFGSGM* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00493 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 447 IPR027417 -
Rops9g00493 597 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 82 463 - -
Rops9g00493 597 FunFam ATP-dependent RNA helicase RhlE 78 295 - -
Rops9g00493 597 CDD SF2_C_DEAD 318 435 - -
Rops9g00493 597 SMART helicmild6 346 426 IPR001650 -
Rops9g00493 597 Pfam DEAD/DEAH box helicase 111 280 IPR011545 GO:0003676|GO:0005524
Rops9g00493 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 465 IPR001650 -
Rops9g00493 597 MobiDBLite consensus disorder prediction 522 545 - -
Rops9g00493 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Rops9g00493 597 Gene3D - 310 468 IPR027417 -
Rops9g00493 597 Pfam Helicase conserved C-terminal domain 321 426 IPR001650 -
Rops9g00493 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 292 IPR014001 -
Rops9g00493 597 SMART ultradead3 106 309 IPR014001 -
Rops9g00493 597 Gene3D - 88 296 IPR027417 -
Rops9g00493 597 MobiDBLite consensus disorder prediction 557 580 - -
Rops9g00493 597 MobiDBLite consensus disorder prediction 473 597 - -
Rops9g00493 597 CDD DEADc 98 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00493 Rops-Chr9 7021497 7025948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00493 92 463 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 6.00e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00493 - - gmx:100786041 860.522