Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00488 ATGTTTGGTTCTGCCGGGATTGTTTCCGATATTGCTCTCCGTCTTCGTCAAAACTTATCACTTCGTGGTGTGTGGACACGGAGTATAAACATTGGAGGTGGTGTTGGAGGGGAGATTCCAGATAACAAGCGCCTTGAGTATGCCCTTCAGCATATCCATGGGATTGGTCGTTCCAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAGAACAAATATGTCAAGGAACTAAGCAAAAGAGAACTCTATTCCATTCGTGAATTACTATCCAAGTACTTGATTGGAAATGATTTGAAAAAGTGTGTCGAGAGAGATGTGGGAAGGTTGGTGAGCATTCAGTGCTACAGAGGGATCAGGCATGTTGATGGATTACCCTGCAGAGGACAGAGAACTCATACAAATGCCCGAACCAGGAAGAGCATGCGTCGTTTTGGGGGTTCAAGATAA 447 0.4497 MFGSAGIVSDIALRLRQNLSLRGVWTRSINIGGGVGGEIPDNKRLEYALQHIHGIGRSKAHHIVCELGVENKYVKELSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVSIQCYRGIRHVDGLPCRGQRTHTNARTRKSMRRFGGSR* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00488 148 FunFam Ribosomal protein S13 101 139 - -
Rops9g00488 148 Pfam Ribosomal protein S13/S18 36 137 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops9g00488 148 ProSiteProfiles Ribosomal protein S13 family profile. 35 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops9g00488 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 21 139 - -
Rops9g00488 148 FunFam 30S ribosomal protein S13 35 100 - -
Rops9g00488 148 Hamap 30S ribosomal protein S13 [rpsM]. 28 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops9g00488 148 MobiDBLite consensus disorder prediction 132 148 - -
Rops9g00488 148 SUPERFAMILY S13-like H2TH domain 36 143 IPR010979 GO:0003676
Rops9g00488 148 MobiDBLite consensus disorder prediction 129 148 - -
Rops9g00488 148 Gene3D - 35 100 - -
Rops9g00488 148 Gene3D 30s ribosomal protein s13, domain 2 102 144 IPR027437 -
Rops9g00488 148 ProSitePatterns Ribosomal protein S13 signature. 116 129 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00488 Rops-Chr9 6890941 6892310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00488 43 141 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.268 6.16e-06 42.0