Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00487 ATGAGGTTTTCTTCTTCTGGATTTAATCCACCACTTGCAGAAGAAGAAGGAGGGGATAAAAAATGTTTGAATTCGGAACTTTGGCATGCATGTGCCGGTCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGAGAAGTAGATGCACATATGCCTAATTACCCTAATTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTCTAAGTCTGCAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTTCTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGACAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTGACTACAGGATGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCGGTTCTTTTCATCTGGAATGAAAAAAATCAGTTACTCTTGGGCATACGAAGAGCAAATCGTCCGCAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTTTAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTACGTCAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAGTCAAGTGTCCGCCGATACATGGGTACTATAACAGGAATCAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTTCCCTTGAGGTTGAGGCGCCCTTGGCCATCGGGACTGCCTTCTTTATATGGTCTCAAGGATGGTGACATGAGCATTAGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTGAACTTCCAGGGGCTGGGCATTACAACATGGATGCAACCAAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGAACTCTGCTGCATTCCAAGAAATGAGGACAATGGATCCATCAAAATCTTCTTCCCAATCTCTGTTGCAGTTTCAACAGACTTCAAATGTTCCCTCTGCTCATACTTCAGAGATACAAAGGCAAGCATTACCGCAGTCTCAGCCACAAAACACCCTTCTACACAGTTTTCAAGAAAATCAGGTGCCTGCTCAGTCACAACTTCTGCAACAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGCGACACAGTCTCAATCTCCACCCATGCAAGCCCTAGCTCCACACTGCCAACAGCAAAGCTTTCCTGAACCTATCAGGAATCATATTTCTAGCTCTGATGTTTCCACTATCCAGAGTCTACTAGGTTCATTCCCTCATGATGGAACATCGCAGTTACTTAATTCGAATGGATCCAATTCTGTTATATCATCTGCGGCGATACTACCTAAGCAAATAACTGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTGGAAAGCATGGGAACATCACAATCAAATGTATCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCAAGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATCGATCCCTCTTCTCTTATGCTGCAAAATGGCATACCAAACCTGAGAAATATGGGCAATGTGAATGATTCATTGTCATTGCCATTTTCTGCTTCAGACTGTGGTGGTGCTACGGGCACTGATTTCCCCCTTAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTTCAGCAACTATGATGAGCTGCGCAGTGAGCTCGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGACATTCTTCTTCTTGGCGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATACTGTCTCCTCAAGAGGTGCAACAAATGGACAGAAGTGTTAGTACTTCTTCTACTTCTGCCCCAGGTCACAAAGTTTCTTCTAATGCTGGCAACTCTTGTGATAATTATGTGAGTCAACAAGAGTTGAGAAATTCAAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2706 0.4497 MRFSSSGFNPPLAEEEGGDKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHMPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSLQEQKEVYLLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMSISSPFMWLQGGLGDQGMQSLNFQGLGITTWMQPRLDASIPGLQPELYQAMNSAAFQEMRTMDPSKSSSQSLLQFQQTSNVPSAHTSEIQRQALPQSQPQNTLLHSFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQQLKNLPVQQQLPNVISPLSNFASATQSQSPPMQALAPHCQQQSFPEPIRNHISSSDVSTIQSLLGSFPHDGTSQLLNSNGSNSVISSAAILPKQITVEPQLPSAAAQCVLPQVESMGTSQSNVSELAALPPFPGREHSAYQGAADPQSNLLFGINIDPSSLMLQNGIPNLRNMGNVNDSLSLPFSASDCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSNYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPQEVQQMDRSVSTSSTSAPGHKVSSNAGNSCDNYVSQQELRNSRNGMASMGSFHY* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00487 901 ProSiteProfiles PB1 domain profile. 763 850 IPR000270 GO:0005515
Rops9g00487 901 Gene3D - 295 367 - -
Rops9g00487 901 SUPERFAMILY DNA-binding pseudobarrel domain 116 260 IPR015300 -
Rops9g00487 901 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops9g00487 901 Gene3D - 759 854 - -
Rops9g00487 901 SMART B3_2 131 233 IPR003340 GO:0003677
Rops9g00487 901 MobiDBLite consensus disorder prediction 456 492 - -
Rops9g00487 901 Pfam AUX/IAA family 752 849 IPR033389 -
Rops9g00487 901 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Rops9g00487 901 FunFam Auxin response factor 129 233 - -
Rops9g00487 901 MobiDBLite consensus disorder prediction 854 878 - -
Rops9g00487 901 Gene3D - 129 232 IPR015300 -
Rops9g00487 901 FunFam Auxin response factor 758 854 - -
Rops9g00487 901 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Rops9g00487 901 SUPERFAMILY CAD & PB1 domains 756 839 - -
Rops9g00487 901 CDD B3_DNA 130 231 IPR003340 GO:0003677
Rops9g00487 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 854 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops9g00487 901 FunFam Auxin response factor 295 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00487 Rops-Chr9 6865411 6873329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00487 1 474 B3 DNA Binding Superfamily AT1G30330 84.486 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops9g00487 AUX_IAA 1.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00487 - - gmx:100810798 1615.9