Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00478 ATGTTGGGGCAGATAACATCATTCATTTTTAGTTACAAAAACAGTCTTTGGCTTTGCCTTAACCAAAGAAAAACACAGGTTTTGTCTTATCTAAGGAAACTGGTTTGGTTAACCATGAACAACAGTATTCCAGGATGGAGTTTTGGGAGTGATACCTGTGTCACCAATCAAAAGAAATCCAAAGGGATGGGCCAAGAACTTGTAGAGCTTCTATGGCAAAATGGGGAAGTAGTTATGCACAGCAAAACAAATAGGAAACCAGTTGGGAATTCATCTGAATTGAGACAGGTTCAGAAAAACGACCAATCAACATTAATAAGGACTGGTGGGCCATATGGGAATTCAAGTAAATTGAGTCAAGAAGATGTGACAGTCCCATGGATTCATTACTCACTTGAGGATCCATTTGAACAAGAATTCTGCTCAAACCTTTTATCTGAGCTAGCACCTTGTGGATTTGAAGAGGAAAAGTTTCCCAACCCTGTTGCCTCTAGTGCCCCCCATGCAACTTCAATTTCACAATTACCTAATATGAAACCATCCTGTGTTCAAGAATTCCAAGCAAATCCTCAGCCTGCTCCAAGATTTCATGTTCCTGATTCATCTCAGAAGATCAATGACTTTGGTGGATCAAGAAAAGTCCTCAATTTTCCTCACTTTTCAGCACCCCTCAATGTTTCTTCAGCAACAGCTAGTGCACAGTTTAGAGAGGAAGTTACTGCTAATCAGTCACAAAGTGAGGCCAAAGAGTGCTCAGTGATGACAGTTGGTTCAGGTCACTGTGGCAGTAATCACATTAACATCCCTCAGGATCCAGATTTAAGCAGGGTATCAAGCAATGGTGTTTGGGCCACTACTTTATCAGCTGAGCCTAAAGCCATCAAAGATTGCGTCCAGAGAACAATTGCTAAGAGTGATAAAGGAAAATCAGAGATGATTGAACCAACTGTCACCTCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCGCTGTCAACAAGAAATCATGGCCAAAAGAGAAAAGGGACAGATGCAGAAGCAATAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGACATCTGAGAGGGCAGGGTCTTCCAAAAGGAACCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGAAGAAGAGTTAGGATCAATGAGAAGATGAGAGCATTGCAGCAACTGCTACCTAACTGTACCAAGACAGATAAAGCATCAATGTTAGATGAGGCAATAGAATACTTGAAATCACTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGCATGACACCACTGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGAATATGGGAATGGCTGCATCTTCTTTGCCTTCTATTCACAATCCAATGCAATTATCAAGAGTGCCACATGATCAGTCCATTAATGTGGCTCAGATACCAAACCAGGTAGCAATGTGCCAAAATCCAGTTTTGAGTGCATTTAATTACCAAAATCAGATGCAAAATCCATGCCTTTCTGAGCAATATGCACGTTACATGAGTTATCTTATGCAAAGTGCCTCTCAGCCAGTGAATGTATTTGGATATGGTTCCCAGCCAGCTCAAGAAAGTCAAACAATGATTGCACCTAGCAATGGCAGTGGACCCATGAGTGGAGCAGCTAATATTGACGATGCTGTGAGTGGCAAAATGGGTTCTTCCACCTTTAACTGA 1740 0.4178 MLGQITSFIFSYKNSLWLCLNQRKTQVLSYLRKLVWLTMNNSIPGWSFGSDTCVTNQKKSKGMGQELVELLWQNGEVVMHSKTNRKPVGNSSELRQVQKNDQSTLIRTGGPYGNSSKLSQEDVTVPWIHYSLEDPFEQEFCSNLLSELAPCGFEEEKFPNPVASSAPHATSISQLPNMKPSCVQEFQANPQPAPRFHVPDSSQKINDFGGSRKVLNFPHFSAPLNVSSATASAQFREEVTANQSQSEAKECSVMTVGSGHCGSNHINIPQDPDLSRVSSNGVWATTLSAEPKAIKDCVQRTIAKSDKGKSEMIEPTVTSSSGGSGSSIGRTCSLSTRNHGQKRKGTDAEAIEEQSEATELKSADGNKTSERAGSSKRNRAAEVHNLSERRRRVRINEKMRALQQLLPNCTKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMTPLMFPGIQHYMSQMNMGMAASSLPSIHNPMQLSRVPHDQSINVAQIPNQVAMCQNPVLSAFNYQNQMQNPCLSEQYARYMSYLMQSASQPVNVFGYGSQPAQESQTMIAPSNGSGPMSGAANIDDAVSGKMGSSTFN* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00478 579 MobiDBLite consensus disorder prediction 312 339 - -
Rops9g00478 579 Gene3D - 374 435 IPR036638 GO:0046983
Rops9g00478 579 Pfam Helix-loop-helix DNA-binding domain 383 429 IPR011598 GO:0046983
Rops9g00478 579 MobiDBLite consensus disorder prediction 546 579 - -
Rops9g00478 579 MobiDBLite consensus disorder prediction 546 560 - -
Rops9g00478 579 CDD bHLH_AtPIF_like 379 442 IPR047265 -
Rops9g00478 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 428 IPR011598 GO:0046983
Rops9g00478 579 FunFam Basic helix-loop-helix transcription factor 374 437 - -
Rops9g00478 579 MobiDBLite consensus disorder prediction 340 385 - -
Rops9g00478 579 MobiDBLite consensus disorder prediction 305 385 - -
Rops9g00478 579 PANTHER TRANSCRIPTION FACTOR PIF3 55 534 IPR044273 GO:0003700|GO:0006355
Rops9g00478 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 442 IPR036638 GO:0046983
Rops9g00478 579 SMART finulus 385 434 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00478 Rops-Chr9 6780328 6784790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00478 8 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.028 8.40e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g00478 HLH 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00478 K16189 - gmx:100811777 766.533