Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00475 ATGGGAGGTGTGGAAGATGAAGAACCAGCCTTGAAACGTATGAAATTGTCCTCTAAAGGAATAGTTGAATTGTCTAACGGTTCCTCTTCTATAGAGCCTGTTGGAGGCTTCTCTTGTGACTTGATGGCTCGGCCCCTATTGTCCCAAGGGGACGAACAAGTTGTTGGTTCCAAAGGGGTTATAAAGAGAGAGGAATTTGTAAGGATAATTGCAAAGGCATTATATTCTCTTGGTTACAGAAAGAGTGGAGCTCATCTAGAGGAGGAGAGTGGAATACCTTTACACTCATCTGGGGTGAATCTGTTTATGCAGCAAATACTTGATGGAAATTGGGATGACAGTATAACCACATTGCATAAAATTGGTCTGGGGGATGAAAGCATTGTTAGGTCGGCCTCATTTTTAATATTGGAGCAAAAATTCTTTGAACTTCTAAATGGGGATAAGGTCATGGAAGCATTGAAGACCTTGAGGACAGAGATTGCTCCACTTAGCATTTATAGTAGTAGAATTCGTGAGCTTTCTTCCTGCATAGTGTCTCCATCTCCTAAGCAAGATATTGTAAAGGTGAGGTCTCGGTCAAAGCTTCTGGAGGAATTGCAAAAACTTCTTCCTCCAACAGTGATGATACCTGAAAAGAGGTTGGAACATCTAGTTGAACAAGCCCTTATCTTGCAACGAGAGGCTTGCCCATTTCACAACTCATTGGATAAGGAGATGTCATTGTATTCAGATCATCATTGTGGAAAAGATCAAATTCCTTCCAGAACATTACAGATATTAGAAGCACATGATGATGAAGTCTGGTTTGTACAATTTTCACATAATGGGAAATATTTAGCTTCAGCATCAAATGATCAAACTGCAATAATTTGGGAGGTTGGCATAAATGGACTGTCTGTAAAGCATAGATTATCTGGTCACCAGAAACCTGTTTCTTCTGTTTCATGGAGTCCTAATGACCAAGAGATCCTCACATGTGGAGTGGAGGAAGCTATAAGGCGATGGGATGTCTCTACTGATGGGAAAGAAGTGGAGTCTTGGAAAGGACAAAAAACCCTTAAGATTTCAGATTTGGAGATAACAGATGATGGGGAAGAAATTCTAAGTATTTGTAAAACCAATACAGTACTGTTGTTCAATAGAGAAACAAAGGATGAGAGATTTATTGAAGAGTATCAGACAGTAACCTCTTTTTCTTTATCAAAGGATAACAAATTCTTGTTGGTTAATCTTTTGAACCAAGAAATACATCTATGGAACATTGAAGGTGATCCTAAGCTTGTTGGCAAGTACAAAGGTCATAAACGTGCCAGGTTTATTATCAGGTCTTGCTTTGGTGGACTTAAGCAAGCTTTTATTGCTAGTGGAAGTGAGGATTCACAGGTTTACATATGGCACAGAAGCTCAGGAGAGTTAATAGAGGCATTGCCTGGTCATTCAGGAGCTGTGAATTGTGTGAGCTGGAATCCAACTAACCCCCACATGTTAGCCTCAGCCAGTGATGACCGGACAATTAGGATATGGGGCCTTAATTGTCTGAATAAAAAGTACCAAAATGCGCACAGCAATGGCGTCCATTACTGCAATGGGGGAACTTAG 1602 0.4039 MGGVEDEEPALKRMKLSSKGIVELSNGSSSIEPVGGFSCDLMARPLLSQGDEQVVGSKGVIKREEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSSGVNLFMQQILDGNWDDSITTLHKIGLGDESIVRSASFLILEQKFFELLNGDKVMEALKTLRTEIAPLSIYSSRIRELSSCIVSPSPKQDIVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALILQREACPFHNSLDKEMSLYSDHHCGKDQIPSRTLQILEAHDDEVWFVQFSHNGKYLASASNDQTAIIWEVGINGLSVKHRLSGHQKPVSSVSWSPNDQEILTCGVEEAIRRWDVSTDGKEVESWKGQKTLKISDLEITDDGEEILSICKTNTVLLFNRETKDERFIEEYQTVTSFSLSKDNKFLLVNLLNQEIHLWNIEGDPKLVGKYKGHKRARFIIRSCFGGLKQAFIASGSEDSQVYIWHRSSGELIEALPGHSGAVNCVSWNPTNPHMLASASDDRTIRIWGLNCLNKKYQNAHSNGVHYCNGGT* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00475 533 CDD WD40 258 527 - -
Rops9g00475 533 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Rops9g00475 533 Gene3D - 234 391 IPR015943 GO:0005515
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 512 IPR001680 GO:0005515
Rops9g00475 533 SUPERFAMILY WD40 repeat-like 255 509 IPR036322 GO:0005515
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 340 - -
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 476 IPR001680 GO:0005515
Rops9g00475 533 PANTHER WD REPEAT PROTEIN 26-RELATED 12 340 - -
Rops9g00475 533 Pfam WD domain, G-beta repeat 474 509 IPR001680 GO:0005515
Rops9g00475 533 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Rops9g00475 533 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Rops9g00475 533 Pfam WD domain, G-beta repeat 427 466 IPR001680 GO:0005515
Rops9g00475 533 Gene3D - 392 530 IPR015943 GO:0005515
Rops9g00475 533 PRINTS G protein beta WD-40 repeat signature 497 511 IPR020472 -
Rops9g00475 533 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Rops9g00475 533 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Rops9g00475 533 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 95 152 IPR006595 -
Rops9g00475 533 ProSiteProfiles LIS1 homology (LisH) motif profile. 62 94 IPR006594 GO:0005515
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 294 IPR001680 GO:0005515
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 512 - -
Rops9g00475 533 SMART ctlh 95 152 IPR006595 -
Rops9g00475 533 SMART WD40_4 425 467 IPR001680 GO:0005515
Rops9g00475 533 SMART WD40_4 470 510 IPR001680 GO:0005515
Rops9g00475 533 SMART WD40_4 298 337 IPR001680 GO:0005515
Rops9g00475 533 SMART WD40_4 386 421 IPR001680 GO:0005515
Rops9g00475 533 SMART WD40_4 341 381 IPR001680 GO:0005515
Rops9g00475 533 SMART WD40_4 254 293 IPR001680 GO:0005515
Rops9g00475 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 346 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00475 Rops-Chr9 6738716 6743658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00475 260 515 Eukaryotic Initiation Factors Gene Family AT2G46290 22.394 7.88e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00475 K22382 - gmx:100780502 947.577