Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00472 ATGGAAAATTCTAAGAGAAGCAGGGTAAGGCAGTACAACAAATCTGAACTTCCAAGGTTGCGGTGGACACCTGAACTCCATCAACACTTTGTTGAAGCTGTTGAAAGTCTTGGTGGAAAACACAAGGCAACTCCAAACCGAATTTTGCAGCAGATGCGTGTGAAAGGATTAAGAATCGCTCATATCAAAAGCCATCTTCAGATGTACAGAAACATGAAAGGACATGCCATTCTCGAACCAGTGGATCAATTGCTGGAAGGAAATACAAACGATCTCAAAACCTGCTCCATTTGCACAACCGAAAGATCGACGGGAACTACTTTAAGAGCATCAAAATATGAAAGCAGGATGCTCAAACAGGAACTTCATCTGTTAGACAACGAAAAAGGGCTTTCACAAACCAGCGAAGAAACTGATTATGATCTAAACCAGGAGCCGGAGTCAAGCGCATGCCTGCTTAGTGATGATGTGTACGAAGAAGAAAATTGTAACATGATCAAATTTCCTGATTTCCCATTATCTTTTAGCATGCCTCCAATTTCGAAGATGCATGGTGAGAGTGGCCAAGAGAAAATGTGTTCTTCGTCATCGACTTCTGCAGCTGGTAATCATTCAGTTGATTCTAGTTCTATACCGTCTTTTGGGAACAATTATATAAACCTAGACCTAACAATTTGA 678 0.41 MENSKRSRVRQYNKSELPRLRWTPELHQHFVEAVESLGGKHKATPNRILQQMRVKGLRIAHIKSHLQMYRNMKGHAILEPVDQLLEGNTNDLKTCSICTTERSTGTTLRASKYESRMLKQELHLLDNEKGLSQTSEETDYDLNQEPESSACLLSDDVYEEENCNMIKFPDFPLSFSMPPISKMHGESGQEKMCSSSSTSAAGNHSVDSSSIPSFGNNYINLDLTI* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00472 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 74 IPR017930 -
Rops9g00472 225 MobiDBLite consensus disorder prediction 124 143 - -
Rops9g00472 225 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Rops9g00472 225 MobiDBLite consensus disorder prediction 188 209 - -
Rops9g00472 225 SUPERFAMILY Homeodomain-like 18 71 IPR009057 -
Rops9g00472 225 FunFam Two-component response regulator 13 76 - -
Rops9g00472 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 137 IPR046955 GO:0003700
Rops9g00472 225 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
Rops9g00472 225 MobiDBLite consensus disorder prediction 182 209 - -
Rops9g00472 225 Gene3D - 17 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00472 Rops-Chr9 6688814 6698569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00472 9 80 G2-like Transcription Factor Family AT2G42660 61.111 4.58e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops9g00472 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00472 - - gmx:102661690 282.722