Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00468 ATGGATAATGCAAATGAAGCATCATCTTGCTTGAGTTTTGTATCATCTCACTTATCGAATGATTCTAGTAATCATAACATATCTTCCTCCACTAGCAATGACCATGGGGCAAATATTGAAATTTTGAGTCTGAATAAACTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGCTGAATATGATTATAGTGATGTTGAGATTCTTGTTGAAGACATCCCTGTGGGTATTCATCGTTGTATATTGGCTTCACGTAGTCATTTTTTTCATGAGCTTTTTAAGAAAGGAAATGTTGGATCAGTGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGCACAGTGGGATATGAAGCTTTCCTTGCTTTCTTGCATTATTTGTATACTGGAAAGCTGAAGGCTTCACCACCAGAAGTGACAACATGTGTTGATGAAACATGTATCCATGATGCATGCCGCCCTGCTATCAATTATGCTTTGGAACTGATGTATGCTTCTGCCACTTTTCAGATAAAAGAGCTGGTTTTACTTTTTCAGCGGCATCTTCTAAATTTTGTGGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTGTGGCTGCCTACCACTTCCAACTAAACCAGCTTCTCTCTCAGTGTATTCAGAGAGTAGCAAGGTCTGACCTTGACAGCATATCTTTGGAAAAAGAACTCCCTCATGAAGTTGTGACTGAAATCAAATCACTCCGATTCCCATCTCTGTCAGAATCCACACCTAATGCAATGGAAGTTGAACCTTCGAATGATAAGAGTATCAGGAAAATCCTTAAAGCACTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTTTAAATGAATCTAGTGTCACTCTAGATGATGCCTATGCTCTACACTATGCATGTGCCTATAGTGATTCTAAGGTTGTTCAAGAAGTTCTTAGTCTAGGCTTGGCTGATATTATCCTTAGAAATCCCCGAGGATACACGGTTCTTCATGTGGCTGCAAGAAGAAAAGATCCAACCATTTTGGTAGCACTACTGAAAAAAGGGGCCTGTGCATTAGATACCACTCCGGATGGACAAACTGCTCTTTCAATTTGTCAGAGGTTGACAAGGCGCAAAGATTATCATGAGAAAACAGTGCAGGGGAAGGAATCTAACAAAGACACGCTCTGTGTTGATGTCCTTGAGAGAGAGATGAGAAGAAATTCTATGTCTGTGAATATGTCTGTTTTGTCACAGTTAACTGCTGATGACTTGCACAGGAGACTGGAGTACCTTGAAGATAGAGTTGCATTTGCTAGGCTGTTTTTTCCAGCTGAGGCTAGGGTAGCTATAGAGAATGCTGAGGCGGATTCAACATCGCTGTATGCAAGTTCATCAGTTTTGAAGGGCTCAAATGGCAATCTTAAAGAAGTAGATCTAAATGAAACTCCCTCTGTTCGAACCAGAAAACTCCAGTTAAGATTGCATGCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTTTTTCCCCATTGCTCTGAGGTGCTTGATAAGTTTCTGGAGGAAGATGATATGCCTGATGTTTTCTTCCTAGAGAAGGGCTCTGAAGAAGAACAGAGAACCAAGAAAGCACGCTTCATGGAACTTAAAGATGAGGTGCAGAAGGCATTTCACAAGGATATGGCTGAAAATAACCATTCAGGTTTTTCATCTACAGTATCTTCCACATTATCCTCAACTCGTAGGGATGGTCTTAACCACAGGGTGAGGAAAAAATGA 1773 0.4078 MDNANEASSCLSFVSSHLSNDSSNHNISSSTSNDHGANIEILSLNKLSGSLEKLLIDAEYDYSDVEILVEDIPVGIHRCILASRSHFFHELFKKGNVGSVKEGKPRYLMSDLVPYGTVGYEAFLAFLHYLYTGKLKASPPEVTTCVDETCIHDACRPAINYALELMYASATFQIKELVLLFQRHLLNFVEKALVEDVIPILVAAYHFQLNQLLSQCIQRVARSDLDSISLEKELPHEVVTEIKSLRFPSLSESTPNAMEVEPSNDKSIRKILKALDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKVVQEVLSLGLADIILRNPRGYTVLHVAARRKDPTILVALLKKGACALDTTPDGQTALSICQRLTRRKDYHEKTVQGKESNKDTLCVDVLEREMRRNSMSVNMSVLSQLTADDLHRRLEYLEDRVAFARLFFPAEARVAIENAEADSTSLYASSSVLKGSNGNLKEVDLNETPSVRTRKLQLRLHALVKTVENGRRFFPHCSEVLDKFLEEDDMPDVFFLEKGSEEEQRTKKARFMELKDEVQKAFHKDMAENNHSGFSSTVSSTLSSTRRDGLNHRVRKK* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00468 590 Pfam NPR1/NIM1 like defence protein C terminal 371 574 IPR021094 -
Rops9g00468 590 Pfam BTB/POZ domain 60 158 IPR000210 GO:0005515
Rops9g00468 590 SMART BTB_4 63 189 IPR000210 GO:0005515
Rops9g00468 590 SUPERFAMILY Ankyrin repeat 269 372 IPR036770 -
Rops9g00468 590 PANTHER REGULATORY PROTEIN NPR3 22 580 IPR044292 GO:0009862|GO:2000022|GO:2000031
Rops9g00468 590 Pfam Ankyrin repeats (3 copies) 277 354 IPR002110 GO:0005515
Rops9g00468 590 Gene3D Potassium Channel Kv1.1; Chain A 32 221 IPR011333 -
Rops9g00468 590 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Rops9g00468 590 MobiDBLite consensus disorder prediction 556 590 - -
Rops9g00468 590 MobiDBLite consensus disorder prediction 562 580 - -
Rops9g00468 590 FunFam Regulatory protein NPR3 37 221 - -
Rops9g00468 590 CDD BTB_POZ_NPR_plant 45 189 - -
Rops9g00468 590 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Rops9g00468 590 FunFam regulatory protein NPR3-like 263 403 - -
Rops9g00468 590 SUPERFAMILY POZ domain 60 187 IPR011333 -
Rops9g00468 590 Gene3D - 264 403 IPR036770 -
Rops9g00468 590 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Rops9g00468 590 SMART ANK_2a 295 325 IPR002110 GO:0005515
Rops9g00468 590 SMART ANK_2a 329 359 IPR002110 GO:0005515
Rops9g00468 590 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00468 Rops-Chr9 6661205 6665841 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops9g00468 NPR1_like_C 2e-83 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00468 K14508 - gmx:100816582 972.23