Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00458 ATGACAAGTCATATCTACCTCAGTGAAAGATCATCTGCAAACAGACCACCACTGTTTGAAGGAAAGGCTTTTGCATACTGGAAAACCAGAATGGAGCTGTTCTTGAAATCTCAAGATGTATTCATGTGGGATATCATTGAGAATGGTGACTACCATCCCACAAAAGCAGCTGAAGATGGAGGTGTTGAAAACAAACCACCTACTGAGATGACTCCAGATGAAAGGCATAGGTATCTTCTAAACTCAAAAGCAAAATTATATCTTACCTGTGCTCTAAGTAAAACTCAGTTTGATAAAGTATCAGAATGTGATACTGCAAAAGAAATGTGGAACATCCTTGTAGTCGCTTATGAAGGAACAAGAAAGGTGAAACTAGCTAGATCAGCTATGCTTACCATTCAATTTGAAACCTTTCAAATGAAAGAAGGAGAATCCATTGAAGAAATGTTTAGTAGACTCATTATAATTACAAATGAGTTGAAATCTCTTGGAACACCAATCACAAAGCTGAAAAAGGTCCAAAAGCTACTTGGAAGTCTTCCAGATCAATGGAATGCCAAAGTCTCTGCTATAGAGGAATCCAAGGATCTTGAAGAGCTCAAGCTGGATGAACTTATGGGCATCCTAATGGTCTATGAGCAGAAACTGGAAGGAAGAGCCTTGTTAAAGAAAAACAACAAGTCAGTAGCTTTCAAAACAGCAACTGAGCAATCAACTGATGAAGAGCAACTGAGCAATGATGAAGATGAAGAAGAAGATGAAATAGCTTTCATCTCAAAGCAAATTAAGAAGATTTTTGACCATCGTATAGCTGATGCCTACTCTGCAAACATGTTCTTCGTATCGTGGGCTGAGATGGCCCAGCCCAACAAGCCCACAGTTTCCACAAAGCCCTGTTTCTGGCACTCCATTCTCATCCCACGACGCCTACCTTCCATCCACCCTTCACTCCATGACATATACGTCCCCATCTCGGACCTCCCTCCCCCACCCGAATGTGGATCTGGATCCGACCCACTCATCAGCCGCATATACTACGTGACATGTGAACAACTCAACCACATGCAGTCACTGGCTAGCTCAAACGGTGCAAAACGCACAAAGCTGGAATCCTTCTCTGCATTCCTATGGAAGATGGTTGCCACTGCTGCTGCCAGTGGTGATGGGAAAGAGAAGGTTATTGCCAAGATGGGTTTGGTGGTTGATGGAAGGAAGAGGCTTTGCAACGGTGACAAGAACAAGGAAGCAATCATGAGTTCATATTTTGGCAACGTGGTTTCCATTCCTTACGATGGGAAAAAAATGGAGGAGCTCGTAGAAAAGTCATTAAGCTGGGTGGCGGAGCAAGTTCATGAGTTTATAGAGACGGTAGTGACAGAGGAACATTTCTTGGGGCTGATTGATTGGGTGGAAGAACATCGCCCAGTGCCAGGGTTGGCTAGGATTTATTGCGGTGGCATCGGAGAGAAGGGACCAGCTTTAGTGGTATCTTCTGGGCAAAGGTTTCCGGCGACGAAGGTAGACTTTGGGTGGGGGAAGCCTGTGTTTATGACGTACCCTTTTCCTTGGGGTGGAGATGTTGGTTATGTAATGCCGATGCCAAGTCCTAAAGGCAATGGTGACTGGCTCCTTTACATGCACCTTCCAAAGACACATTTGCTCTTCATTGAGTCTCAGGCTCCCCATTTCTTTAGGCTCTTCTCTTGGGATTACCTCCTCAATCAACATTGA 1731 0.4414 MTSHIYLSERSSANRPPLFEGKAFAYWKTRMELFLKSQDVFMWDIIENGDYHPTKAAEDGGVENKPPTEMTPDERHRYLLNSKAKLYLTCALSKTQFDKVSECDTAKEMWNILVVAYEGTRKVKLARSAMLTIQFETFQMKEGESIEEMFSRLIIITNELKSLGTPITKLKKVQKLLGSLPDQWNAKVSAIEESKDLEELKLDELMGILMVYEQKLEGRALLKKNNKSVAFKTATEQSTDEEQLSNDEDEEEDEIAFISKQIKKIFDHRIADAYSANMFFVSWAEMAQPNKPTVSTKPCFWHSILIPRRLPSIHPSLHDIYVPISDLPPPPECGSGSDPLISRIYYVTCEQLNHMQSLASSNGAKRTKLESFSAFLWKMVATAAASGDGKEKVIAKMGLVVDGRKRLCNGDKNKEAIMSSYFGNVVSIPYDGKKMEELVEKSLSWVAEQVHEFIETVVTEEHFLGLIDWVEEHRPVPGLARIYCGGIGEKGPALVVSSGQRFPATKVDFGWGKPVFMTYPFPWGGDVGYVMPMPSPKGNGDWLLYMHLPKTHLLFIESQAPHFFRLFSWDYLLNQH* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00458 576 Pfam gag-polypeptide of LTR copia-type 82 217 - -
Rops9g00458 576 Gene3D - 328 558 IPR023213 -
Rops9g00458 576 Pfam Transferase family 266 560 - -
Rops9g00458 576 MobiDBLite consensus disorder prediction 232 252 - -
Rops9g00458 576 Coils Coil 241 261 - -
Rops9g00458 576 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 266 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00458 Rops-Chr9 6466113 6478028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00458 268 557 Monolignol Biosynthesis Gene Families AT5G48930 26.689 8.68e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00458 - - gmx:100809201 460.299