Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00452 ATGGTTGCGTTGGTAACAGAAGGGGCAGATCCAGATCTTGGCGGTGAAATCGACACGAGAGAAAGGGTTGAGGGAAGAGGTGCAGGTTTTGCAACGGAGAGGGGCGTAAGGGAGACGAGGGATGTCAGGGTGGGGACGGATGACGGAGAGGGTGGCAGCGAGGGGGATGACACACTTGCTGGCTTCCACTTGGTCCTTGGCCACACGTTCCATGTCATCGGAAGAGGGGGTGGGGGTCTGATTGTGAGGAAGATTCGATCGAAGGTGATGTGGACCTCCTGCTCCGACGAGCGAAAATCTAATACCGGCTCCGGCGAGACGGAGAAGGTGTCTTCGGTTTCAGTCGTTGTGGTGGAGGCCGGAATGAAGGGAAGGTGGAGAAGTGGAGGCCAGAGTGAAGGGAAGGTGGAGAAGATGGGAGGGGTAAAAATGTCTGAAATCAATTCTGTTGAAAAGATTGTCAAGGCAGTCTATGTTAACATACCTCCTAAACCTTTACCTATTGGTCAGAACCCAGTTGGACTTGAACACCGCATAGAAGAGGTGAAGTCACTTCTAGACAAGAAGCCTTTACCTACTGTATGCATGTTGGGTATATATGGATTTGGTGGAGTAGGGAAAACAGAACTTGCCAAAGCTTTGTATAACAAGATTGTGCACCAATTTGATGCGGCAAGTTTTCTTGAGATTGTTACAGAATTAAAAGATAGTAAAGACCTGGAAGATCTACAGAAGAAACTTCTATCAGATATGCAGGAGGAGTTAGAAACTAAGTTGAGCAATACAAGTAAAGGAATCTATGAAATAAAATGCAAGCTTGGCAAGAAAAAAGTTCTTTTGGTTCTTGATGGCGTTAATGACAAAGAACAATTAAGTAACTTGGCAGGAGAATGTGATTGGTTTGGTCCAGGTAGCAGGATCATTATAACAACAAGGGACAAAGATTTGCTTATTGATCATCAAGTTAACAAAGTTTATAAAATGATGGAGCTTAATGATCAACATTCTCTTGAGCTCTTTTGTCAGAAAGCCTTCGGAAAGAGCTATCCAGAAATAGGCTATGAAGATATGTCTTCTCGTGTAGTAGATTATGCCAAGGGTCTTCCATTGGCTTTAAGAGTAATAGGCTCTGATTTGGGTAGTAAAAAAAATCTAGAAGATTGGGAATGTGCATTGAAAGAATACAAGAGGATTCCAAATAAAGAGATTCAAGACGTGCTCAAAATAAGCTATGATAGATTGGAGGACCATGCCAGGGATGTTTTCCTAGACATAGCTTGCTTCTTCATAGGGGAGAGAATAGAATATGTTGAAAAGATACTTGAGGAATTTGGTGCAGCATATAATATTAAAGTACTAGTTAATAAATCTCTCCTAACTGTTGAACATGGCTACTTGAAGATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTAGGCAGGAGAAACCAGATCAACATGGTAAACGTAGCAGATTATGGTTTTATGAAGATGTTCTTGAAATATTGACGAAAGATTCTGGAAGTGATGCAATACAAGGGATAATGCTTGATCCCCCTCAACGAGAAGAAGTAGATTGGAGTGGTACTGCCTTTGAGAAGATGAAAAACCTCAGAATTCTCATTATTCGAAATACAGCCTTTTCATCAGAGCCTAGACACTTGCCAAATCATTTAAGGCTTCTTGATTGGGAAAAGTACCCATCAAAGTCTTTCCCACCAAAATTTCATCCGAAGAAAATCATTGCCTTCAATTTGTCTCACAGCTATCTTAAATTGGAAGAGCCATTTAAGAAATTTTCATTAAGAACATTGTATTTTGGAAATAGTGGTTTGTCTGATGAAGATCTTTGTGCAATTCTCAACTATTTTCCAAAATTAGAAGAGTTGATTGCATCAGAGAATAATTTTGAATCTCTCCATGAATGTATTAAAGAGTTTATTCACTTGACAAGTCTCGACGTGAGTGTTTGCCAAAAGCTTCAAGAAATTCCAAAATGTACAAACTTGAGAATTCTTGATGTCCATCAGTGTGAGAAGCTTGAACACATTTCAGAGTTGCCATCTACTATTCAGAAAGTAGATGCAAGATACTGCTTTTCCTTATCAAGAGAGACGTTAAATATGTTATGGTATCAGGTCCTGAAAGAGATACGTGGATTAGAAATTGTGATACCCGAAAACAAGATTCCGGAATTGTTTTATAGGGGCAATGGGGAGAAGAATCCGCATTTCTGGGCTCGTAGGAAGTTCCCTCCTGTTGCTTTAGCATTGGTGTTCGATGATGTGAATGAAATGGCTAGACAATCTCACGAGCAACTTGTTGAGCTTCAATTGGTTGTCAAGGGTGACAAACTTTGGAACAACTACAATGTGTGTCTTCGCTTGAATTGCAACAGCGCCGTCGACCCCCTCTCCTTGCTGCTACATACCAGCTCCTCCTTTTCTTCTTCCTCTTCCCTTGCTTTTCCTCACATGGTGCAAAACACCATACAAGACAATACTGACGATGATGCAATGGAGCACTATGGTCAAAAAACAAAGTTTTGCAGAACTTGA 2562 0.4098 MVALVTEGADPDLGGEIDTRERVEGRGAGFATERGVRETRDVRVGTDDGEGGSEGDDTLAGFHLVLGHTFHVIGRGGGGLIVRKIRSKVMWTSCSDERKSNTGSGETEKVSSVSVVVVEAGMKGRWRSGGQSEGKVEKMGGVKMSEINSVEKIVKAVYVNIPPKPLPIGQNPVGLEHRIEEVKSLLDKKPLPTVCMLGIYGFGGVGKTELAKALYNKIVHQFDAASFLEIVTELKDSKDLEDLQKKLLSDMQEELETKLSNTSKGIYEIKCKLGKKKVLLVLDGVNDKEQLSNLAGECDWFGPGSRIIITTRDKDLLIDHQVNKVYKMMELNDQHSLELFCQKAFGKSYPEIGYEDMSSRVVDYAKGLPLALRVIGSDLGSKKNLEDWECALKEYKRIPNKEIQDVLKISYDRLEDHARDVFLDIACFFIGERIEYVEKILEEFGAAYNIKVLVNKSLLTVEHGYLKMHDLIQDMGREIVRQEKPDQHGKRSRLWFYEDVLEILTKDSGSDAIQGIMLDPPQREEVDWSGTAFEKMKNLRILIIRNTAFSSEPRHLPNHLRLLDWEKYPSKSFPPKFHPKKIIAFNLSHSYLKLEEPFKKFSLRTLYFGNSGLSDEDLCAILNYFPKLEELIASENNFESLHECIKEFIHLTSLDVSVCQKLQEIPKCTNLRILDVHQCEKLEHISELPSTIQKVDARYCFSLSRETLNMLWYQVLKEIRGLEIVIPENKIPELFYRGNGEKNPHFWARRKFPPVALALVFDDVNEMARQSHEQLVELQLVVKGDKLWNNYNVCLRLNCNSAVDPLSLLLHTSSSFSSSSSLAFPHMVQNTIQDNTDDDAMEHYGQKTKFCRT* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00452 853 Gene3D Ribonuclease Inhibitor 524 708 IPR032675 -
Rops9g00452 853 PRINTS Disease resistance protein signature 666 682 - -
Rops9g00452 853 PRINTS Disease resistance protein signature 196 211 - -
Rops9g00452 853 PRINTS Disease resistance protein signature 272 286 - -
Rops9g00452 853 PRINTS Disease resistance protein signature 365 379 - -
Rops9g00452 853 Gene3D - 154 326 IPR027417 -
Rops9g00452 853 Gene3D - 330 415 IPR042197 -
Rops9g00452 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 126 702 IPR044974 GO:0006952
Rops9g00452 853 SUPERFAMILY L domain-like 515 705 - -
Rops9g00452 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 425 IPR027417 -
Rops9g00452 853 Pfam NB-ARC domain 176 403 IPR002182 GO:0043531
Rops9g00452 853 SUPERFAMILY "Winged helix" DNA-binding domain 401 504 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00452 Rops-Chr9 6262676 6276127 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00452 173 696 WRKY Transcription Factor Family AT5G45050 31.373 3.18e-69 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00452 - - pvu:PHAVU_008G194900g 602.053