Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00450 ATGGCAAACTATGGAGAAGAATCCCGTAGTTTCACCTATGATGTTTTCCTCAGTTTTAGAGGAGAAGATACACGGCACACATTTATCAAAGATCTTCGTGCAGAGTTGCGTCGGAAGCATGGGGAAGGTATTTCACCTGCTCTTTCCAATGCAATCAAACAATCAAAGATTTCAATTGTTGTGCTTTCTGAGAATTATGCAACTTCCACTTGGTGTCTTCGGGAACTTGACCAGATAATATCCCAGAAGAAGGAAAACAACGAACGAGTTGTTTTCCCAATTTTTTACCTTGTAGATCCGTCAGATGTACAGGATCAGAAAAAGAGTTTTGGCAAAGCAATAAAAGATCACGAGGACAATGGCAAAAACTCCGAGGAAGTGCAGAAGTGGAAATCAGCTTTGTCTTACATAGGTGGCTTAGAAGGGCCGCATATTACTACTACCGAGTGTGAAAATTTTATTGAAGAGATTGTTAAGAAGGTCCGCGCTGACAAAGTTCGTAAACCTTTACCTGTTAGCAAAGACCTAGTTGGATTTGAGCACCGCATAGAAAAGGTGGAATCACTTCTAGAACTGAAGCCGTATGATGATACTGTGCTCATGATGTGCATCTGGGGACTTGGTGGAGTAGGTAAAACAGAACTTGCCAAAGCATTGTATAGAAAGATTGTGCACCAATTTGATACTGCATGTTTTCTTGAGAGTGTTAGAGAGAAATCAGGAAAAAACAACGGCCTGGAGGTTCTACAAAAGACACTTCTGTTAGAGATGCGGGAGGAGTTTGAATCCAAGTCGGGCAATGCAAGTCAAAGAATCGATGAAATAAAATGCAAGCTCATCAAGAAAAAAGTTCTTTTGGTTCTTGATGACATTGATGACATATATCAGTTAAATAACTTGGCAGGAGGATGTGATTGGTTTGGTTCAGGCAGTAGGATCATTATAACAACAAGGCATAAAGATTTGCTTGTTGGTCATGAAGTTCAAAAGATTTATCAAGTGACAGAGCTTAACGATGAGCATTCTCTTAAGCTCTTTTGTCAGAATGCATTCAAAGAGAGTCTTCCTAAACCAGGCTATGAAGATATGTCATCTCGTGCAGTGGGTTATGCCGGAGGTCTTCCATTGGCTTTAAAAGTAATAGGCTCCAATTTGGCTTCTCAACAAAGTTTAGAAGCCTGGGAAAGTGCATTGAAAGTATATGAGAGCATTCCACATACAAAGATTCAAGACAAGCTCAAAGTAAGCTACGATGGATTGGAGGACAGTGCCAAGCATGTTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGAACAGAATATGTTGAAAAGATACTTGAGGAATTCGATGCAACACATAATTTCGAAGTACTAGTTAATAAATCTCTCATAACAGTTGAAGACAGCTGCTTGAAGATGCATGATCTACTACAAGATATGGGTCAAGAGATTGTTAGGCGAGAAGAACAAATTCCTAGCAAACGTAGTAGATTATGGTTTTATGAAGATGTTCTTGAAGTTTTGAATGAAGATTATGGAAGTGACGCAATACAAGGGATAATGCTTGATCCCCCCCAACGAGAAGAAGTAAATTGGAGCGGCACTGCCTTTGAGAAGATGAAAAACCTCAGAATTCTCATTATTCGAAATACATCCTTTACATCAGGGCCTAAACATATGCCAAATTCTTTAAGGTTGCTTGATTGGGAGGGATACCCTTCAAGATCTTTTCCGCCAGATTTTCATCCGACAAAAATCATTGTCTTCAATTTGTGTGGAAGCAACCTTACACTAGAAGAGCCATTTAAGGAATTTCCAAGTCTGATTAACATGAATTTCTCAGATAGTCAATCTATCACTGTAATTCCTGATGTGTCTAAAGTTCCAAATTTGAGAGAACTGAGACTTGATAATTGTAAGGAACTATTTCAGGTTCATGAGTCTGTTGGATTTCTCGAAAGGCTTGCTCACTTAAGCGTTTCAGGATGCTCCGAACTTATACATTTCCCGCAAAGTATATTTTTACCATCTCTGGAAGTCCTCGACCTTAATTTCTGCGTAAAGCTTGAACACTTCCCATATATAGTGAACTACATGAATAAGCCATTGAAGATTTATATGATAGATACTGCTATTAAAGAGCTACCAGATTCTATTGGTAAACTTACTGGCCTTGTTTGTATAGAGATAACAGGTAGCAATGAACTCAGATATCTACCAAGTAGCTTATTCATGTTGCCAAATGTTGTTGCATTTAAAATTGGAGGATGTTCTCATCTTCAAGAATCCTTTAAAAGGTTCTTAGAAGGTCATTCAACAGCCAGTCCAGCATTAACAACATTGTCTTTTGTCAAAGGTGGTTTGTCAGATAAAGATCTTTGCACAATTCTCAATTGTTTTCCGAAATTAAAAGAATTGACTGCATCAGAGAACGAATTTGTATCTCTCCCTAAATGCATTAAAGAGTCTATTCACTTGACAAGTCTTGATTTGAGTCGTTGCGAGATGCTTCAAGAAATTCCCGAATCCACAAACTTGAGAATTCTTGATGTCCATTGGTGTGTGAACCTCAGACACATCTCAGAGTTGCCCTCTACTATTCAGAAAGTAGATGCACGATATTGCAGATATTTAACACCAAAGACGTTAACCATGTTATGGTCTCAGGTTTCAAAAGAGATACGTGAATTAGATCCAAAAGAGAAAGATGAGCCTTCAAACAACGATGTAGGAGAAGCCTCAACCTCTGGCCATCCTCACAATCCCGATGGCAACGATGCCCTCATCGATTCATTCTGCGAGATCACTGTTTCCCCCAGGGAACAAGCAGTGTTCTTTTTGGACAGCCACAACTTCGACCTAGACGCCGCCGTTTCAACGTTCTTTGACAGCATCAACAACATCACAAAGAGGGATGAAAACTATCCTAAACCAGTGAAGCCACGCCATCTTCCTTTCCGGGGTATTGGAAGAACTTTAGGTAGCAGCAGCTCTAGCAGTGAAGCTGCTGGTGAATCTACTCAGACAACTACTGGTGCTTCACCAAATACTGCTCCAGTGCCAGCAATGGGTTTAGTTGTAGATGAGTCACAGCCAGTTACATCAATCCAGATAAGGTTAGCTGATGGTACACGCATGGTTTCTCGCTTCAATCCCCACCATACAATCAGAGATGTTCGAGCATTCATTGATGCATCAAGACCTGGTGGAGTAAGAAGTTACCAACTGCAGACAATGGGTTTTCCTCCCAAACAGCTCGCTGATTTGGACCAAACTATAGAACAAGCTGGTGCCAATTCAGTTATTATCCAAAGATTGTAG 3324 0.401 MANYGEESRSFTYDVFLSFRGEDTRHTFIKDLRAELRRKHGEGISPALSNAIKQSKISIVVLSENYATSTWCLRELDQIISQKKENNERVVFPIFYLVDPSDVQDQKKSFGKAIKDHEDNGKNSEEVQKWKSALSYIGGLEGPHITTTECENFIEEIVKKVRADKVRKPLPVSKDLVGFEHRIEKVESLLELKPYDDTVLMMCIWGLGGVGKTELAKALYRKIVHQFDTACFLESVREKSGKNNGLEVLQKTLLLEMREEFESKSGNASQRIDEIKCKLIKKKVLLVLDDIDDIYQLNNLAGGCDWFGSGSRIIITTRHKDLLVGHEVQKIYQVTELNDEHSLKLFCQNAFKESLPKPGYEDMSSRAVGYAGGLPLALKVIGSNLASQQSLEAWESALKVYESIPHTKIQDKLKVSYDGLEDSAKHVFLDIACFFKGERTEYVEKILEEFDATHNFEVLVNKSLITVEDSCLKMHDLLQDMGQEIVRREEQIPSKRSRLWFYEDVLEVLNEDYGSDAIQGIMLDPPQREEVNWSGTAFEKMKNLRILIIRNTSFTSGPKHMPNSLRLLDWEGYPSRSFPPDFHPTKIIVFNLCGSNLTLEEPFKEFPSLINMNFSDSQSITVIPDVSKVPNLRELRLDNCKELFQVHESVGFLERLAHLSVSGCSELIHFPQSIFLPSLEVLDLNFCVKLEHFPYIVNYMNKPLKIYMIDTAIKELPDSIGKLTGLVCIEITGSNELRYLPSSLFMLPNVVAFKIGGCSHLQESFKRFLEGHSTASPALTTLSFVKGGLSDKDLCTILNCFPKLKELTASENEFVSLPKCIKESIHLTSLDLSRCEMLQEIPESTNLRILDVHWCVNLRHISELPSTIQKVDARYCRYLTPKTLTMLWSQVSKEIRELDPKEKDEPSNNDVGEASTSGHPHNPDGNDALIDSFCEITVSPREQAVFFLDSHNFDLDAAVSTFFDSINNITKRDENYPKPVKPRHLPFRGIGRTLGSSSSSSEAAGESTQTTTGASPNTAPVPAMGLVVDESQPVTSIQIRLADGTRMVSRFNPHHTIRDVRAFIDASRPGGVRSYQLQTMGFPPKQLADLDQTIEQAGANSVIIQRL* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00450 1107 ProSiteProfiles UBX domain profile. 1030 1107 IPR001012 GO:0005515
Rops9g00450 1107 Gene3D - 924 965 - -
Rops9g00450 1107 SMART till_3 12 140 IPR000157 GO:0007165
Rops9g00450 1107 Gene3D - 10 165 IPR035897 -
Rops9g00450 1107 Pfam UBA-like domain 927 965 - -
Rops9g00450 1107 Gene3D Ribonuclease Inhibitor 706 898 IPR032675 -
Rops9g00450 1107 Gene3D Ribonuclease Inhibitor 529 705 IPR032675 -
Rops9g00450 1107 MobiDBLite consensus disorder prediction 972 1022 - -
Rops9g00450 1107 SUPERFAMILY UBA-like 926 965 IPR009060 GO:0005515
Rops9g00450 1107 FunFam Plant UBX domain-containing protein 4 978 1107 - -
Rops9g00450 1107 Pfam NB-ARC domain 183 414 IPR002182 GO:0043531
Rops9g00450 1107 CDD UBX_UBXN2 1036 1106 - -
Rops9g00450 1107 MobiDBLite consensus disorder prediction 992 1018 - -
Rops9g00450 1107 MobiDBLite consensus disorder prediction 897 926 - -
Rops9g00450 1107 ProSiteProfiles TIR domain profile. 11 165 IPR000157 GO:0007165
Rops9g00450 1107 Gene3D - 336 421 IPR042197 -
Rops9g00450 1107 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 857 IPR044974 GO:0006952
Rops9g00450 1107 Gene3D - 979 1107 - -
Rops9g00450 1107 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 140 IPR035897 -
Rops9g00450 1107 Pfam TIR domain 13 165 IPR000157 GO:0007165
Rops9g00450 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 431 IPR027417 -
Rops9g00450 1107 PRINTS Disease resistance protein signature 201 216 - -
Rops9g00450 1107 PRINTS Disease resistance protein signature 674 690 - -
Rops9g00450 1107 PRINTS Disease resistance protein signature 278 292 - -
Rops9g00450 1107 PRINTS Disease resistance protein signature 371 385 - -
Rops9g00450 1107 SUPERFAMILY Ubiquitin-like 987 1098 IPR029071 -
Rops9g00450 1107 SMART ubx_3 1029 1106 IPR001012 GO:0005515
Rops9g00450 1107 Gene3D - 166 332 IPR027417 -
Rops9g00450 1107 Pfam UBX domain 1030 1104 IPR001012 GO:0005515
Rops9g00450 1107 SUPERFAMILY L domain-like 520 882 - -
Rops9g00450 1107 SUPERFAMILY "Winged helix" DNA-binding domain 407 509 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00450 Rops-Chr9 6220074 6226838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00450 4 762 WRKY Transcription Factor Family AT4G12020 30.364 6.37e-86 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00450 - - gsj:114376984 1078.16