Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00448 ATGGATGTGGCCAAGTTACATGATTCTGATGACAAGAAAGAAGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTGCGGAGAAAGGTGGAGAAGAAGTCTCTTCGAATTGAACAACTCATCAAACAGATTGACATCTACAAATACGATCCATGGGATCTTCCAAAAACGAGTTCTTTGGGGGAGAAGGAATGGTATTTCTTCTGCATAAGAGGAAGAAAATATAAGAACAGCGTAAGGCCTAACAGGGTGACAGGGTCAGGGTTTTGGAAAGCGACAGGGATTGACAAGCCTATATACAGTGTTAAAGAATCCCATGAATGCATTGGCCTCAAGAAATCTTTGGTCTATTACCGTGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCACCCAATGGCAAAACTAACAATAATCCACAAGCTAATGATAATGCTCAAGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAACGAATCCCATCTTACAAGAAATACACGCCAAATTTGAAAGACTCGGCAGCACAAGTCACCAAGCCAAACCACTCTAATTCTTCAAGTTCTAAAACATGCAGCTTAGAATCTGACAACAGCAAGCCATACTTGACTTTCACAGAGTCAACAATCATTCAACAAAATGAAAGGAAACATGTTATTGGACAGGTTGATGAAAGGAACCACTTATTTCTAGGCCAGTTAGGCAATGTTGTTCAGGCTCCAACAACATTGTCTTACTCAAGTTTTTGGAATCAGGATGTGGATGAAGCACTTACAAATGAGAACTGGGATGATCTTAGATCTGTGGTTCAGTTTGCCATTGATCCATCCCAGACACCTAACATTGTAAGTCATCATCAGATATCATGCATAAACTGGGGATTGCTTGAAGAGGGAGAAAAGGGAGGGAGAGACAGTCCATTTCATGGGCCTCAAGATAGCTCAGATGAGTTTACCTGTAGTTTAAGGTACCCTATTCTTTGA 1035 0.4135 MDVAKLHDSDDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKSLRIEQLIKQIDIYKYDPWDLPKTSSLGEKEWYFFCIRGRKYKNSVRPNRVTGSGFWKATGIDKPIYSVKESHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTNNNPQANDNAQEAEVWTLCRIFKRIPSYKKYTPNLKDSAAQVTKPNHSNSSSSKTCSLESDNSKPYLTFTESTIIQQNERKHVIGQVDERNHLFLGQLGNVVQAPTTLSYSSFWNQDVDEALTNENWDDLRSVVQFAIDPSQTPNIVSHHQISCINWGLLEEGEKGGRDSPFHGPQDSSDEFTCSLRYPIL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00448 344 SUPERFAMILY NAC domain 16 176 IPR036093 GO:0003677|GO:0006355
Rops9g00448 344 MobiDBLite consensus disorder prediction 189 214 - -
Rops9g00448 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 231 - -
Rops9g00448 344 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Rops9g00448 344 Gene3D NAC domain 27 180 IPR036093 GO:0003677|GO:0006355
Rops9g00448 344 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Rops9g00448 344 FunFam NAC domain-containing protein 35 27 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00448 Rops-Chr9 6112782 6117185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00448 12 177 NAC Transcription Factor Family AT5G39820 63.736 2.19e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g00448 NAM 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00448 - - gmx:100784323 480.715