Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00440 ATGTACAAGGAATACCGAGACACTACTCTAAATGGTGGTGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGGGTCAGGTATCCATGCATACAGATTATTAAGACAGCTACCATCCCAGCTAAGTCGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAACTCTAAAATCAAGTTCCCTTTGGTGTTCAAGAAGGTTAGGCCTCCAACTAGGAAGCTGAAGACAACATACAAAGCATCCAGGCCCAACCTATTTTTGTGA 264 0.4356 MYKEYRDTTLNGGVEQMYNEMASRHRVRYPCIQIIKTATIPAKSCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFL* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00440 87 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 37 IPR023573 GO:0003735|GO:0005840|GO:0006412
Rops9g00440 87 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 86 IPR028877 -
Rops9g00440 87 Gene3D - 1 56 - -
Rops9g00440 87 FunFam 60S ribosomal protein L18a 1 56 - -
Rops9g00440 87 SUPERFAMILY RplX-like 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00440 Rops-Chr9 6009098 6009361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00440 1 87 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 89.655 1.24e-55 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00440 K02882 K22683 jre:109014971 174.096