Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00428 ATGGCAAATAATAAGAATCCCTTCTATCACTCAAGCTTTCCATTCTTTAGGGACAACAACCAAACAGCACAAAACTTTGAAGGATTTGATCCTTCTCATACCAGTTTCAGTGACTACTTACATGGTTCCATGGACTACAACACTCTTTCAAGAGCCTTTGACTTGTCTTGCTCATCATCTGAAGTGATCTCTTCCATTGATGAGAACCCAAAGAAACCGAGTGCAGGAGACTCAGTGGGGAACCAACCAACACCCAATTCCTCAGTCTCTTCCTCATCTAATGAAGCTGAAGCAGTAACAGAAGAAGACTCAACCAAAACCAAGAAAGATAAGCAGCCAAAAGGTTGTGAAGAAGATGGAGACCAAAAGTCTAAGAAAGAGAACAAACCCAAAAAGAAAGAGAAAAAGCCAAGAGAGCCACGATTTGCTTTCTTAACTAAAAGTGAGATTGATCATCTTGAAGATGGATACAGATGGAGAAAATACGGACAGAAAGCGGTCAAGAATAGTCCGTACCCAAGGAGTTATTACAGATGCACAAGTCAGAAGTGCGATGTAAAGAAAAGGGTGGAGAGGTCATACCAAGACCCATCAATTGTGATGACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACACTGAGGGGCAATGCTGCTACAATGTTCTCCTCACCTTCCCTTTTTGGTTCCACATCTATGGGATTGGGACCAAACTTACCTCAAGATTTTCTTGCTCAGTTGCTTCCAAGTTATAGCCAAAGTGATCACCAAAACCCCATGTTCCACCAAAACCAAAACCATCCCCATCCCCATTCACAACAACAGCAGCAGCAGCAGTTCCAACTCCCTCATGACTATGGATTGTTGCAAGATCTACTACCATCATTCCAAGGAAGACAAGAGCCATGA 915 0.4273 MANNKNPFYHSSFPFFRDNNQTAQNFEGFDPSHTSFSDYLHGSMDYNTLSRAFDLSCSSSEVISSIDENPKKPSAGDSVGNQPTPNSSVSSSSNEAEAVTEEDSTKTKKDKQPKGCEEDGDQKSKKENKPKKKEKKPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCDVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNAATMFSSPSLFGSTSMGLGPNLPQDFLAQLLPSYSQSDHQNPMFHQNQNHPHPHSQQQQQQQFQLPHDYGLLQDLLPSFQGRQEP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00428 304 SMART WRKY_cls 153 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00428 304 ProSiteProfiles WRKY domain profile. 148 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00428 304 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00428 304 MobiDBLite consensus disorder prediction 255 282 - -
Rops9g00428 304 MobiDBLite consensus disorder prediction 64 143 - -
Rops9g00428 304 MobiDBLite consensus disorder prediction 75 98 - -
Rops9g00428 304 SUPERFAMILY WRKY DNA-binding domain 146 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00428 304 MobiDBLite consensus disorder prediction 99 143 - -
Rops9g00428 304 Gene3D WRKY domain 139 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00428 304 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 276 IPR044810 GO:0003700
Rops9g00428 304 FunFam WRKY transcription factor 57 139 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00428 Rops-Chr9 5914197 5916609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00428 28 304 WRKY Transcription Factor Family AT4G18170 45.051 2.05e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g00428 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00428 - - aprc:113847247 430.254