Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00419 ATGGATAGAAAGCAGGAACAAGACAAGGGGAATCCAAACCCAAATATGTCTAGCATTGATGTTACTGTAATATCTCCCAAAGTTCCAAAAGCAGTTTCGCCAGTTTCTTCTGCAGCAGAGGGGGAAACCTTAAGACGACCCCGTGGCCGGCCGGCTGGCTCTAAAAACAAACCTAAGCCACCAATAATTGTCACCAGAGAGAGTGCTAATGCACTCAAGGCTCATGCCATGGAAGTGAGCTCTGGCTGTGATGTGAATGAAAGTTTGTTAAACTTTGCAAGGAGAAAGCAACGTGGCCTTTGCATACTTAATGGGACTGGCTGTGTAACAAATGTAACATTGCGCCAGCCAGCCTCATCTGGTGCCATTGTAACCCTTCATGGAAGATTTGAGATTCTCTCATTGCTGGGGTCAATCCTTCCCCCACCAGCACCTCCAGGGATCACTGGCCTTACAATATACTTGGCTGGTGCTCAAGGGCAAGTTGTGGGAGGAGCTGTAGTTGGTGCTTTGATAGCTTCAGGCCCTGTTGTAATCATGGCTGCATCATTCATGCATGCTACTTTTGATCGTCTGCCACTGGAAGATGATGAACTTGCTGCTGCAATGCAGAATCATCATTACCAAAATGGACGTGCACATCATCTTGATATCTCAGACTTATATGCAATGCCACAGAACCTGCTCATGAATGGTGCAATGCCCCCGGAGATATACTCTTGGGCACAGGGAAGGAACTTGTCAAAAACCTGA 753 0.4701 MDRKQEQDKGNPNPNMSSIDVTVISPKVPKAVSPVSSAAEGETLRRPRGRPAGSKNKPKPPIIVTRESANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNHHYQNGRAHHLDISDLYAMPQNLLMNGAMPPEIYSWAQGRNLSKT* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00419 250 Gene3D - 71 215 - -
Rops9g00419 250 MobiDBLite consensus disorder prediction 1 61 - -
Rops9g00419 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 184 IPR005175 -
Rops9g00419 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 210 IPR014476 GO:0003680
Rops9g00419 250 FunFam AT-hook motif nuclear-localized protein 72 213 - -
Rops9g00419 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 201 - -
Rops9g00419 250 ProSiteProfiles PPC domain profile profile. 69 207 IPR005175 -
Rops9g00419 250 CDD DUF296 75 155 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00419 Rops-Chr9 5633488 5634240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00419 1 241 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 69.008 2.37e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00419 - - gmx:100804941 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00419 9 5633488 5634240 Rops9g00419 9 5633488 5634240 ECH