Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00401 ATGGAAGACAAGAAACTTCAACGCCGCTTCTCACTTGGAAGGCAATCCTCTCTGGCGCCGGAGAGCGATGATGCCGGCGCCGGCGCCTGTTCGGATTCGGCAGCGGTGGACCCGACGGTTCGATTGATGTATTTGGCGAACGAAGGTGACTTGGAAGGTATGAAGGAGCTTTTGGACGCAGGTAGTGACGTCAATTTCAGGGACATTGATGGCCGCACCGCTCTTCACGTCGCGGCCTGTCACCGCCGCACCGATGTTGTTGACTTGTTGCTTCAAAGAGGTGCTGACGTGGACCCTCAAGACCGTTGGGGCAGTACACCTCTAGCAGATGCATTGTACTACAAGAATCATGATGTTTTTAAACTTTTGGAGAAACATGGTGCAAAACCCCCGATGGCTCCCATGCATGTCCAAAATGCTCTTGAAGTCCCAGAATATGAGATTGACCCTTCTGAACTTGATCTTACAAATAGTGTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAAGTCGCTGTCAAAACGCTTGGGGAGGAAGTGTTCACTGATGATGATAAAGTAAAGGCATTTCATGATGAGCTTACATTACTTGAAAAAATAAGGCATCCGAATGTAGTCCAGTTTTTGGGTGCCGTAACACAAAGCACTCCAATGATCATTGTCACAGAGTATCTACCCCAGGGGGATCTTCGTGCCTACCTGAAGCGGAAAGGTGCGTTAAAACCAATAACAGCTGTGAAGTTTGCTCTTGATATTGCTAGGGGAATGAACTATTTGCATGAACATAAACCAGAAGCCATTATACACCGAGATCTGGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCAAAGTTACTAAAACAGTCAAAGAAGACAAACCTGTGACATGCCAGGATACATCTTGGCGCTATGTTGCACCTGAGGTCTACAAAAATGAGGAATATGACACCAAAGTGGATGTATTTTCATTTGCTCTGATATTACAGGAGATGATTGAAGGTTGTCCACCATTTTATGAAAAGCCAGAGAATGAAGTTCCTGAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGATTAAAGCATTTAATCGAGGAATGTTGGGATGGAAAACCATCCAGGAGACCAACATTTAGACACATAATTGGGAGATTGGATGACATCAGCTACCATCTTGCTCAAAAGAGGCGCTGGAAGGTTACGGCTCCTGCATGCATCCGGAATCTGGAAGCCCTATTTAAGGGGTATCGCACAAGTCCATGTAGCAGATCATCTCGCATGTCAACCAGATAA 1374 0.4563 MEDKKLQRRFSLGRQSSLAPESDDAGAGACSDSAAVDPTVRLMYLANEGDLEGMKELLDAGSDVNFRDIDGRTALHVAACHRRTDVVDLLLQRGADVDPQDRWGSTPLADALYYKNHDVFKLLEKHGAKPPMAPMHVQNALEVPEYEIDPSELDLTNSVCITKGTFRIALWRGTQVAVKTLGEEVFTDDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEYLPQGDLRAYLKRKGALKPITAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVTKTVKEDKPVTCQDTSWRYVAPEVYKNEEYDTKVDVFSFALILQEMIEGCPPFYEKPENEVPEAYVENERPPFRASPKLYAYGLKHLIEECWDGKPSRRPTFRHIIGRLDDISYHLAQKRRWKVTAPACIRNLEALFKGYRTSPCSRSSRMSTR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00401 457 Gene3D - 4 145 IPR036770 -
Rops9g00401 457 SMART ANK_2a 36 66 IPR002110 GO:0005515
Rops9g00401 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Rops9g00401 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Rops9g00401 457 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Rops9g00401 457 SUPERFAMILY Ankyrin repeat 41 133 IPR036770 -
Rops9g00401 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Rops9g00401 457 FunFam Integrin-linked protein kinase family 19 146 - -
Rops9g00401 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 63 420 - -
Rops9g00401 457 CDD STKc_MAP3K-like 169 412 - -
Rops9g00401 457 SUPERFAMILY Protein kinase-like (PK-like) 165 412 IPR011009 -
Rops9g00401 457 MobiDBLite consensus disorder prediction 1 31 - -
Rops9g00401 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Rops9g00401 457 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
Rops9g00401 457 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Rops9g00401 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Rops9g00401 457 Gene3D Transferase(Phosphotransferase) domain 1 155 420 - -
Rops9g00401 457 ProSiteProfiles Protein kinase domain profile. 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00401 457 Pfam Ankyrin repeats (3 copies) 42 130 IPR002110 GO:0005515
Rops9g00401 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Rops9g00401 457 Pfam Protein tyrosine and serine/threonine kinase 173 411 IPR001245 GO:0004672|GO:0006468
Rops9g00401 457 PIRSF ILK 2 436 - -
Rops9g00401 457 FunFam Os01g0748600 protein 141 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00401 Rops-Chr9 5411992 5418351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00401 1 435 MAP Kinase Kinase Kinase AT4G18950 66.136 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Rops9g00401 PK_Tyr_Ser-Thr 9.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00401 - - gmx:100795964 804.668