Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00395 ATGGAACCCAGTTTGGGTTACTCCAAGTTGCTCTTTTTACTTCTACTTAGTTCCACTTCATTATTTTTCCTGTCACACATGGCCTCTGCAGCCACATCCAAGCTCAATACTGAAGAGGTGAAGGCATTGAAAGAGATAGGGAACAAACTTGGGAAGAAAGATTGGGACTTTGGGGTGGAACCCTGCAGTGGGAAAGGGAACTGGAATGTGTCTGGTGATAGGAAAGGCTTTGAGAGCTCTATCATATGTGATTGTTCTTTCAATCACAACTCTTCTTGCCATGTTGTAAGCATATCCTTGAAAGCTCAGAATCTGTCTGGTACTCTCTCACCAGAGTTTTCCAAGCTTCGTTATCTCAAACTACTGGACCTTAGTCGTAACCTCATCACTGGTTCTATACCTCAACAATTGGCTACCATGCATTTGGTGGAGCTCTCTTTTATGGGAAACAGATTATCAGGGCCATTTCCCAAAGTTCTTACCAATATCACAACCCTCAAAAACCTGAGTATTGAAGGAAATCAATTTTCAGGCCTCGTTCCAACGGAGATTGGAAAGTTGATCAATTTACAGAAAATCATTCTGTCATCAAATGCATTCACAGGAGCATTGCCACCCGCACTTTCCAAGTTGACCAAGTTGACTGATTTGAGGATAAGTGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAAATGGGTATTGATTGAAAAGCTGCACATGCATGGTTGCTCTCTTGAGGGCCCCATACCCTCTAGCATTTCTTCCTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGCAATAGAAGCTCTAGTTTCCCACCACTAAGTAATATGAAATCCATGAAGACACTGATACTGAGAAAATGCTTGATTAAAGGAGAGATCCCCGAATATATTGGGAGAATAGACAAACTGAAAATCTTAGATTTGAGTTTCAATAGCTTGAGTGGAGAGATACCTGAATCTTTTGCCCAACTAGACAAAGTGGACTACATGTATCTTACCGGGAACAAGCTATCAGGAACTATACCAGGCTGGGTCCTTGTAAATAACAAAAATGTTGATGTCTCTGACAATAACTTTGACTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGTGTAAACGTTGTTGAGAGCTACTCTTCATCTGCGGATACACAAAGTAAAGTTCATTCATGCCTAAAAAGGAACTTTCCATGCCCTGCTTCAGTTAGCCAATATCAGTACTCTCTGCACATTAATTGTGGTGGTAATGAAGCAAATATTAGTGGTCGTGTTTATGAAGCTGACAGAGAACGAAAAGGTGCTTCAATGTTATATTACACTAGTCAAGATTGGGCTCTTAGTAGCACTGGGAACTTCTTGGACAATGATATTGACTCTGATCCCTATATTGTGGCCAATACTTCAAGACTTCTTAATGTCTCTGCACTCAATTCAAAACTGTACACAACAGCTCGTGTTTCTCCCGTTGCTCTCACATACTATGGCCTTTGTCTATTAAATGGAAATTACACTGTTAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGGTCATTTGACAGTCTTGGGAGAAGGGTATTTGATGTCTACATTCAGGGGAAATTGGTGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGACAAGCCAATTGTGAAGACATTTAATGCTAGTGTCAGACAACATACTTTGAAGATTCACTTCTACTGGTCTGGAAAAGGAACCACTGGCATACCGACAAGAGGAGTTTATGGACCTCTGATATCTGCTATTTCAGTAGATCCTAATTTCAAACCTCCATCATCAGGGCATGGCAACAGAACTCATGTCATACTGGTCACAGTTAGCATAGTTGCTGGTGTTTTAGTTGTTCTTCTTGCAGTGCTAGGTGTCATGAGGAGAAAGGGATGGTTAGGAGGCAAGGACCCAGTGTACAAAGAGCTTAGAGGTATAGATCTGCAGATGGGATTATTTACTTTGAGACAAATCAAAGCTGCAACCAAAAACTTTGATGCAGCCAATAAAATTGGTGAAGGTGGCTTTGGTTCTGTATACAAGGGCCTATTATCAGATGGTACAATAATTGCAGTAAAGCAGCTCTCTTCAAAATCTAAGCAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATGCTATCTGGACTTCAACATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAAGGAAACCAGCTAATACTGATATATGAGTATATGGAAAATAACTGTCTATCTCGCGTTCTTTTTGGGAAGGATCCAGACAGCAAAACGAAACTGGACTGGCCAACAAGGAAGAAAGTTTGCCTTGGTATAGCAAAAGCTTTGGCTTATCTCCATGAAGAGTCCAGAATAAAAATCATACACAGGGATATAAAGGCAAGTAATGTGTTGCTGGACAAGGATTTTAATGCCAAAGTTTCAGATTTTGGTCTGGCAAAACTCATTGAAGATGACAAAACCCATGTTAGCACCCGAGTTGCAGGAACAATTGGTTATATGGCTCCTGAGTATGCAATGCGTGGCTATTTAACTGACAAAGCAGATGTTTATAGCTTTGGAGTAGTTGTATTGGAAACTGTCAGCGGAAAAAGCAATACAAATTACAGGCCAGACGAGGAATTTTTTTACCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGAAATCTTGTGGAGCTGGTTGATCCAGATTTGGGTTCAGAATATTCAACTGAGGAGGCCATGGTAATGCTAAATGTGGCTCTCATATGTACTAATGCATCTCCTACACTAAGGCCAACAATGTCCCAAGTTGTGAGCATGCTTGAAGGTTGGACTGACATTCAGGACCTACTTTCTGATCCAGGGTATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATGAAAAATCACTTCTGGCAGAATCCAAGCAGAACACAAAGCATGTCAATACCTAGTTTTTATACTGATTCCTCTAGCTCACATGTTAATACAGATGAGAGCTACCGTCTTGTAACAATCAACTCAAATGCATCAGACAACTGA 3087 0.4046 MEPSLGYSKLLFLLLLSSTSLFFLSHMASAATSKLNTEEVKALKEIGNKLGKKDWDFGVEPCSGKGNWNVSGDRKGFESSIICDCSFNHNSSCHVVSISLKAQNLSGTLSPEFSKLRYLKLLDLSRNLITGSIPQQLATMHLVELSFMGNRLSGPFPKVLTNITTLKNLSIEGNQFSGLVPTEIGKLINLQKIILSSNAFTGALPPALSKLTKLTDLRISDNNFFGKIPDFISKWVLIEKLHMHGCSLEGPIPSSISSLTRLSDLRITDLKGNRSSSFPPLSNMKSMKTLILRKCLIKGEIPEYIGRIDKLKILDLSFNSLSGEIPESFAQLDKVDYMYLTGNKLSGTIPGWVLVNNKNVDVSDNNFDWDSSSPTECQRGSVNVVESYSSSADTQSKVHSCLKRNFPCPASVSQYQYSLHINCGGNEANISGRVYEADRERKGASMLYYTSQDWALSSTGNFLDNDIDSDPYIVANTSRLLNVSALNSKLYTTARVSPVALTYYGLCLLNGNYTVKLHFAEIIFINDRSFDSLGRRVFDVYIQGKLVLKDFDIQREAGGTDKPIVKTFNASVRQHTLKIHFYWSGKGTTGIPTRGVYGPLISAISVDPNFKPPSSGHGNRTHVILVTVSIVAGVLVVLLAVLGVMRRKGWLGGKDPVYKELRGIDLQMGLFTLRQIKAATKNFDAANKIGEGGFGSVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRVLFGKDPDSKTKLDWPTRKKVCLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHVSTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVVLETVSGKSNTNYRPDEEFFYLLDWAYVLQERGNLVELVDPDLGSEYSTEEAMVMLNVALICTNASPTLRPTMSQVVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSMKNHFWQNPSRTQSMSIPSFYTDSSSSHVNTDESYRLVTINSNASDN* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00395 1028 Gene3D Phosphorylase Kinase; domain 1 657 758 - -
Rops9g00395 1028 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 235 383 - -
Rops9g00395 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Rops9g00395 1028 Gene3D Transferase(Phosphotransferase) domain 1 759 967 - -
Rops9g00395 1028 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 41 204 - -
Rops9g00395 1028 SUPERFAMILY L domain-like 90 350 - -
Rops9g00395 1028 Gene3D Ribonuclease Inhibitor 163 235 IPR032675 -
Rops9g00395 1028 Gene3D Ribonuclease Inhibitor 41 162 IPR032675 -
Rops9g00395 1028 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Rops9g00395 1028 SMART serkin_6 683 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00395 1028 Pfam Malectin domain 418 604 IPR021720 -
Rops9g00395 1028 Gene3D Ribonuclease Inhibitor 236 379 IPR032675 -
Rops9g00395 1028 ProSiteProfiles Protein kinase domain profile. 683 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00395 1028 CDD STKc_IRAK 689 957 - -
Rops9g00395 1028 Gene3D - 414 608 - -
Rops9g00395 1028 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 992 - -
Rops9g00395 1028 FunFam Putative LRR receptor-like serine/threonine-protein kinase 759 967 - -
Rops9g00395 1028 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 653 758 - -
Rops9g00395 1028 SUPERFAMILY Protein kinase-like (PK-like) 666 987 IPR011009 -
Rops9g00395 1028 Pfam Protein tyrosine and serine/threonine kinase 686 955 IPR001245 GO:0004672|GO:0006468
Rops9g00395 1028 ProSitePatterns Protein kinases ATP-binding region signature. 689 711 IPR017441 GO:0005524
Rops9g00395 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 416 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00395 Rops-Chr9 5363203 5374704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00395 217 1019 Receptor kinase-like Gene Family AT1G07650 64.480 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops9g00395 PK_Tyr_Ser-Thr 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00395 - - vun:114195543 1738.39