Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00390 ATGGGGAAAAACGAGTTTCTCACACCCAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTCCAGAAGCTTCGATGGTATTGCCAGATGTGTCAGAAACAATGCCGAGATGAGAATGGGTTTAAATGCCACTGTATGAGTGAAAGTCACCAACGCCAAATGGAAGTTTTTGGACAAAACCCAACCAGAATAGTTGAGGGCTATACTGAAGAGTTTGAAAGAACTTTTCTTGAGCACATGAAACGCAGCCACAGATTCAGCCGTGTGGCTGCCACTGTCGTTTATAATGAATACATAAACGACAGACACCACGTCCATATGAACTCCACTGAATGGGCTACGCTTACTGAGTTTGTTAAGTATTTGGGTAGAACTGGAAAATGTAAGGTTGATGAAACACCCAAGGGGTGGTTCATTACCTACATTGATAGAGATTCCGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGGATTAAGGCGGATATGGTTGAGGAAGAAAAACAAGAGAAGGAGATTAGGAAACAGATTGAAAAGGCTGAGCAAATGATGCAACAACCTACTTCTGAGTCTGATCAGAAAATTGAGCCTCAGAGGGAACTAAATGCAGAAGATGGAGTTAAGATAGGATTTTCTCTCGGGTCATCGGCTAAACCCGTGATCAAAGAAAAACACGAGGCACCGAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATGAAGAAAGAAATCCTGTAAACAATTTGAAGAGGAAAGAGAGTGGTGGTGGGAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTCAAGGTTATGAGTAAAGTATTGGCAGAGAAGGGGTACTACAAACAAAAAGGCATTGTGAGAAAGGTGATTGACAAATATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGCGTGAAAATAGTCAATGGAGCATATCGTGGATCACTTGCTAGGCTGCTTGGGGTGGACACAGATAATTTTTGCGCTAAGGTGCAGATAGAGAAAGGTCCTTATGATGGTAGGGTGCTTAAAGCCATGGAATATGAGGATATTTCTAAAGTAGCATAG 1188 0.4192 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMEVFGQNPTRIVEGYTEEFERTFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTEWATLTEFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKERMKNKRIKADMVEEEKQEKEIRKQIEKAEQMMQQPTSESDQKIEPQRELNAEDGVKIGFSLGSSAKPVIKEKHEAPRVVFDEGDEEKYEERNPVNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGIVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDISKVA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00390 395 Coils Coil 258 278 - -
Rops9g00390 395 FunFam DNA/RNA-binding protein KIN17, putative 339 395 - -
Rops9g00390 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Rops9g00390 395 MobiDBLite consensus disorder prediction 235 264 - -
Rops9g00390 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Rops9g00390 395 Gene3D - 285 338 - -
Rops9g00390 395 SMART Kin17_mid_2 52 178 IPR019447 -
Rops9g00390 395 Gene3D - 339 395 IPR014722 -
Rops9g00390 395 Gene3D - 60 160 IPR038254 -
Rops9g00390 395 CDD KOW_KIN17 341 394 IPR041995 -
Rops9g00390 395 FunFam DNA/RNA-binding protein kin17-like 285 338 - -
Rops9g00390 395 Coils Coil 154 186 - -
Rops9g00390 395 Pfam KN17 SH3-like C-terminal domain 277 330 IPR041330 -
Rops9g00390 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 395 IPR037321 -
Rops9g00390 395 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00390 1 395 C2H2 Transcription Factor Family AT1G55460 71.223 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00390 K13102 - gmx:100785931 713.375