Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00348 ATGTCGGGCGGAAGAGGAGGAGAAGGTGCCGGGTCGTGGAGCTACAGCCGTCAATCAATGTCAACAAGCAGAAGTGTTGGGTCATCATCCAGCCGGAGTGAGCAGACGATGGCTACACCAGCTAGTGATAACACTTTTCTGAGATTGAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGCTGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAGCGTGCCGTTGGAGGTGGTAAGAGTGGAAGAGGGCTCCGCAAATTTAGTATGAAAATGTGTAATAAGAAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCGTGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTTGTACTAGTCTAAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCTGCCTATTTGCAAGAACTAGAAGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAACGAGCAATTATATAGCTCAGGAAATGCTCCCTTTGGAGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGCCCCCATGCAACTGATGAAGTGGAAAAGATTTCACTCCATGTAGAGATAGCTGGAAAGATCAACAAAATTATCAGAGAAACCGATCTTAGAGAGCTTGGACACTCGGGCAAGACAAGTAGAAGCTGA 735 0.4327 MSGGRGGEGAGSWSYSRQSMSTSRSVGSSSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQAAVASKKKKRGQRAVGGGKSGRGLRKFSMKMCNKKQYDEKNIRRRVYDALNVLVAMDIISKDKKEIQWKGLPCTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPFGGVSLPFILVQTRPHATDEVEKISLHVEIAGKINKIIRETDLRELGHSGKTSRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00348 244 Coils Coil 148 182 - -
Rops9g00348 244 MobiDBLite consensus disorder prediction 12 45 - -
Rops9g00348 244 PANTHER TRANSCRIPTION FACTOR DP 15 96 IPR015648 GO:0005667|GO:0051726
Rops9g00348 244 MobiDBLite consensus disorder prediction 59 84 - -
Rops9g00348 244 Gene3D Transcription factor DP 138 218 IPR038168 -
Rops9g00348 244 Pfam Transcription factor DP 140 211 IPR014889 -
Rops9g00348 244 SUPERFAMILY "Winged helix" DNA-binding domain 92 133 IPR036390 -
Rops9g00348 244 SMART E2F_TDP_2 81 132 IPR003316 GO:0005667|GO:0006355
Rops9g00348 244 CDD DP_DD 137 211 IPR014889 -
Rops9g00348 244 Pfam E2F/DP family winged-helix DNA-binding domain 103 132 IPR003316 GO:0005667|GO:0006355
Rops9g00348 244 Gene3D - 93 137 IPR036388 -
Rops9g00348 244 SMART DP_2 139 243 IPR014889 -
Rops9g00348 244 MobiDBLite consensus disorder prediction 1 45 - -
Rops9g00348 244 SUPERFAMILY E2F-DP heterodimerization region 138 211 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00348 Rops-Chr9 4286524 4287353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00348 70 211 E2F-DP Transcription Factor Family AT5G02470 41.143 4.01e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops9g00348 DP 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00348 K04683 - gmx:100781272 318.546