Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00345 ATGCCTATTGCAAACTCTTCTCCAACTACGACCAAGTGGTTTTCAGGAATGTTAGAAGCAGTAACAAGGTGCAAGGAAGTTTTTTCTTTGTGGATGCTTGCAGTCATTGGAAGTTCTGTAGTTGGGCTATTCAAGAAAGCTATGGAGGGAGTTCTCTTTGCTGCACTTACCTGCATTCTGGTACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGCCATCAAAGGCCAGACTACAGAATATGGTTTTCTTGATGGGGCTGGGAAAGGAGCAATCACAGGAGCCATTGCAGCCATAGAATTGACAAATTTTGTTGCTTTTGATGAGTCATTGACCAAGGTTGCCCTGTTGAGCAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATTTGTCCAGTTGTTGCACAAGCCTACCAGTTGCATATCAACACATCAGAAACAACTTATGGAGGGGCCTCAGATATTTATGATATCAAGGGAGTGAAAGGGATGCGCCAGAATTTTATTCTGAAGCTTCCTTTTCACCAATTCAACTCCAACAAAATGATGAAATCATATAATAAGTCATGCTGCTCAATTTGCTTTCAGGATTTTGAGGATAAAGAATGGGTTAGAATGCTTCCAAAATGTTGCCACCTTTTTCATTTAGAGTGCATAGACAAGTGGCTACTCCAACAAGGGTCATGCCCCATGTGTAGAACTTATGTTAATGACCACATTTTTGAATAG 729 0.4074 MPIANSSPTTTKWFSGMLEAVTRCKEVFSLWMLAVIGSSVVGLFKKAMEGVLFAALTCILVLGGSIVGTIAGAIKGQTTEYGFLDGAGKGAITGAIAAIELTNFVAFDESLTKVALLSSLLNGKVFMEWICPVVAQAYQLHINTSETTYGGASDIYDIKGVKGMRQNFILKLPFHQFNSNKMMKSYNKSCCSICFQDFEDKEWVRMLPKCCHLFHLECIDKWLLQQGSCPMCRTYVNDHIFE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00345 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Rops9g00345 242 Pfam Ring finger domain 191 233 IPR001841 -
Rops9g00345 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 42 234 IPR044523 -
Rops9g00345 242 SUPERFAMILY RING/U-box 184 237 - -
Rops9g00345 242 CDD RING-H2_EL5-like 190 233 - -
Rops9g00345 242 SMART ring_2 191 232 IPR001841 -
Rops9g00345 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00345 Rops-Chr9 4242732 4244336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00345 46 236 C3H Transcription Factor Family AT5G66070 36.816 1.46e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00345 - K19041 gmx:100305612 320.087