Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00344 ATGGGTTGTAGTTTTAGTAAAAAAGGATCAGAGCCAGAACGCATTGGTCACAATCATGTTGGTGTGCATAATCACAATACTCGTGAACCCTTTGTGAACCAATCAAAAGCCCCAGCTAATCATCAACCTTACCAATCACATGAGAAACATGCACCTCAGGCACCATGGAAGCCTAATGTTCCAGCCCCTAGCCCAAAACCTGCTCACAGGTCAGATACTATTCTTGGAAAACCATTTGAGGATGTTAAGCAATTCTATACACTTGGTAAAGAATTGGGTAGAGGCCAATTTGGGGTGACTTATCTTTGTACTGAGAATTCAACTGGCTTGCGATATGCTTGCAAGTCCATTTCAAAGAGAAAGCTTGTTCGCAAATCTGATAAGGAGGATATAAAGAGGGAAATTCAAATTATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCATTCTGTTCATGTTGTTATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGGCATTATAGTGAAAGGGCTGCTGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGTGTGATGCATAGAGATCTGAAGCCAGAGAATTTCTTATTATCCAGTAAGGATGAGAAGGCACTTCTCAAGGCCACTGATTTTGGCTTGTCAGTCTTTATTGAAGAAGGAAAAGTGTATCGAGAAATAGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTTCTACGTCGTAGATATGGCAAAGAAATAGATATATGGAGTGCAGGAGTTATATTGTATGTCTTACTTTGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATCTTTGATGCCATATTGAAAGGTCATGTTGATTTTGATAGTCATCCATGGCCAAGAATATCGAACGGTGCTAAGGACCTCGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATCACTTCAGCTCAGGTTCTAGAGCACCCATGGCTAAAAGAAGGTGGAAGTGCTTCTGACAAGCCAATAGACAGCGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTGAAAAAACTTGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAAATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGTTTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGAGGCAGCTTATGGATGCTGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAACATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAATTGGAAACAGCCATGAAGGAATATGGTATGGGAGATGATGCCACAATCAGGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAAACCCACAACAAGGCAAACTATTCTAA 1605 0.4012 MGCSFSKKGSEPERIGHNHVGVHNHNTREPFVNQSKAPANHQPYQSHEKHAPQAPWKPNVPAPSPKPAHRSDTILGKPFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLRYACKSISKRKLVRKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDEKALLKATDFGLSVFIEEGKVYREIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYVLLCGVPPFWAETEKGIFDAILKGHVDFDSHPWPRISNGAKDLVRKMLIQDPKKRITSAQVLEHPWLKEGGSASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQHFDKDNSGFITRDELETAMKEYGMGDDATIREIISEVDTDNDGRINYEEFCAMMRSGNPQQGKLF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00344 534 Gene3D - 352 527 - -
Rops9g00344 534 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Rops9g00344 534 SMART serkin_6 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00344 534 MobiDBLite consensus disorder prediction 1 73 - -
Rops9g00344 534 ProSiteProfiles EF-hand calcium-binding domain profile. 495 529 IPR002048 GO:0005509
Rops9g00344 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 519 - -
Rops9g00344 534 SUPERFAMILY EF-hand 383 523 IPR011992 -
Rops9g00344 534 CDD EFh 466 524 IPR002048 GO:0005509
Rops9g00344 534 SUPERFAMILY Protein kinase-like (PK-like) 85 351 IPR011009 -
Rops9g00344 534 FunFam Calcium-dependent protein kinase 1 352 527 - -
Rops9g00344 534 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Rops9g00344 534 FunFam Calcium-dependent protein kinase 1 88 171 - -
Rops9g00344 534 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Rops9g00344 534 Coils Coil 409 429 - -
Rops9g00344 534 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Rops9g00344 534 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Rops9g00344 534 Pfam EF-hand domain pair 392 452 IPR002048 GO:0005509
Rops9g00344 534 Pfam EF-hand domain pair 462 524 IPR002048 GO:0005509
Rops9g00344 534 Pfam Protein kinase domain 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00344 534 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Rops9g00344 534 MobiDBLite consensus disorder prediction 27 42 - -
Rops9g00344 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Rops9g00344 534 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Rops9g00344 534 Gene3D Phosphorylase Kinase; domain 1 88 171 - -
Rops9g00344 534 Gene3D Transferase(Phosphotransferase) domain 1 172 351 - -
Rops9g00344 534 CDD STKc_CAMK 85 343 - -
Rops9g00344 534 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Rops9g00344 534 CDD EFh 392 451 IPR002048 GO:0005509
Rops9g00344 534 MobiDBLite consensus disorder prediction 10 24 - -
Rops9g00344 534 FunFam calcium-dependent protein kinase 1 172 351 - -
Rops9g00344 534 SMART efh_1 463 491 IPR002048 GO:0005509
Rops9g00344 534 SMART efh_1 427 455 IPR002048 GO:0005509
Rops9g00344 534 SMART efh_1 391 419 IPR002048 GO:0005509
Rops9g00344 534 SMART efh_1 498 526 IPR002048 GO:0005509
Rops9g00344 534 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00344 Rops-Chr9 4216280 4221456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00344 1 530 EF-hand Containing Proteins AT3G20410 74.771 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops9g00344 Pkinase 3.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00344 K13412 - gmx:100794852 916.761