Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00343 ATGGTTGATTTGGATATTCAGATCCCAAGCACTTTCGATCCATTTGCTGAGGCTAAAGAAACAGATGCACCAGGTGCCAAAGAGTATGTGCATATCCGCATACAACAGAGGAATGGGAAGAAGAGCCTTACCACAGTGCAAGGGTTGAAGAAGGAGTTCAGCTATGAGAAGATCCTGAAGGACCTGAAGAAAGAGTTCTGCTGCAATGGGAATGTAGTGCATGACAAGGAACTGGGCAAGATTATCCAACTCCAAGGTGATCAACGCAAGAATGTTTCCCAGTTCCTTGTTCATGCTGGTCTTGTTAGGAAGGATCACATCAAGATTCATGGTTTCTGA 339 0.4454 MVDLDIQIPSTFDPFAEAKETDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSQFLVHAGLVRKDHIKIHGF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00343 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743|GO:0006413
Rops9g00343 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Rops9g00343 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 112 - -
Rops9g00343 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Rops9g00343 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Rops9g00343 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Rops9g00343 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Rops9g00343 112 NCBIfam translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Rops9g00343 112 Gene3D - 2 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00343 Rops-Chr9 4214265 4215328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00343 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 83.929 4.64e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00343 K03113 - apan:127254848 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00343 9 4214265 4215328 Rops9g00343 9 4214265 4215328 ECH