Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00342 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGAGGAGATTCAAGAATCTATTGATAAGTTGCGATCTACTTTTCATCAATGGGAAACCACTTCTGATGTTAGCGAGCGATCGAATCTTTCAAAGGAGGTTGTAGCTGGTTGTGAAAGTGTTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAATCGAAGGAGGTGGACCGCCAGTGCTCGCACCCAGGTGCGCACAACGAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAATACAACAAATCATGCTAGTGTAAATGAGATGCACAGGGAATTAATGAGGCTTCCTGATTCTCATCAAACTACATCCAACCAATATGCTGCCCAGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAGATGCTTCTTATAAAGACACAGGATGAAGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACTATACATGAGGAGCTCATGGGACAGGAAAAGATTATTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTGATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCCTTGTTCATTTTCCTCTTTATCCTGGTATTCTTCACCTAG 738 0.4201 MPSAQDPFYVVKEEIQESIDKLRSTFHQWETTSDVSERSNLSKEVVAGCESVEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTASARTQVRTTKKAVEAGKGSNTTNHASVNEMHRELMRLPDSHQTTSNQYAAQDNDDFIESESDRQMLLIKTQDEELDELSLSVQRIGGVGLTIHEELMGQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00342 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Rops9g00342 245 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Rops9g00342 245 Gene3D - 2 104 - -
Rops9g00342 245 CDD SNARE_Qc 156 213 - -
Rops9g00342 245 Coils Coil 191 211 - -
Rops9g00342 245 FunFam syntaxin-61 isoform X1 156 217 - -
Rops9g00342 245 Pfam SNARE domain 190 241 IPR000727 -
Rops9g00342 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Rops9g00342 245 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Rops9g00342 245 SMART tSNARE_6 148 215 IPR000727 -
Rops9g00342 245 FunFam Syntaxin 10 3 104 - -
Rops9g00342 245 MobiDBLite consensus disorder prediction 91 114 - -
Rops9g00342 245 Gene3D - 160 224 - -
Rops9g00342 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Rops9g00342 245 PANTHER SYNTAXIN 13 237 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00342 Rops-Chr9 4210095 4213138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00342 55 245 SNARE and Associated Proteins AT1G28490 69.271 3.06e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00342 K08500 - gmx:100793612 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02773 11 47796352 47800853 Rops9g00342 9 4210095 4213138 PCT