Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00334 ATGATGTTCCTTCTTTGCATATTCTGGCTGAAAGAGTGTGCAGCTTGCAAGAGTCAGAGAAGAAGGTGCCCTTCAGATTGCATTTTCAGTCCATATTTCCCTGCCAATGATCCTGAAAGATTTGCTTGTGTTGACAGAATATATGATGTCAGCAATGTTGAAAACATGCTCCAGCAAGTATCTCCCCCTTTACGGGAACAAGTTGCAAATACTTTGTATTTAGAAGCACGATGCAGGATTCAAGACCCTGTTTATGGGTGTGTTGGGATTATCTCTCAATTGTCTCAACAAATCCATGATGCAGAAATTGAGCTAGCCAAAATCCAAACTCAGATTGCTTCTCATAAGTCCCAAAACCCTCAGGTGGAAGCTGAAACAAACTTTAACGTCCTGTCGACTGTTGGAGCTTAA 411 0.4161 MMFLLCIFWLKECAACKSQRRRCPSDCIFSPYFPANDPERFACVDRIYDVSNVENMLQQVSPPLREQVANTLYLEARCRIQDPVYGCVGIISQLSQQIHDAEIELAKIQTQIASHKSQNPQVEAETNFNVLSTVGA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00334 136 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Rops9g00334 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 120 - -
Rops9g00334 136 Coils Coil 91 118 - -
Rops9g00334 136 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00334 Rops-Chr9 4154375 4155297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00334 11 123 AS2 family AT3G26660 54.867 5.79e-42 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g00334 LOB 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00334 - - lang:109328513 192.971