Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00333 ATGATTTCTGGCAGATGTGCAGCTTGCAAGAGTCAGAGAAGAAGGTGCCCTTCGGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTGAAAGATTTGCTTGTGTTCACAGAATATATGGTGGCAGCAACGTTGGGAAAATGCTTCAGCAAATTCCCCCTTATCTACGGGAACAAGCTGCAAACACTTTGTATTTAGAAGCACAACGTAGGATTCAAGACCCTGTTTATGGGTGTGTTGGGATTATCTCTCAATTGTATCAACAAATCCACAATGCAGAAATTGAGCTAGCCAAAATCAAAACTCAGATAATTGCTTGTCAAAAGTTCCATAACCCACATGTTGAAGCTGAACCAAACTTAAACAACGTCTTGTCAGCACAAAGCAGTAGCATGGGGCAGTTTCAATGGCCAAGTCATGCTCCTTGGTTCAATTAA 441 0.4172 MISGRCAACKSQRRRCPSDCIFSPYFPANDPERFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYLEAQRRIQDPVYGCVGIISQLYQQIHNAEIELAKIKTQIIACQKFHNPHVEAEPNLNNVLSAQSSSMGQFQWPSHAPWFN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00333 146 Coils Coil 84 104 - -
Rops9g00333 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Rops9g00333 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 119 - -
Rops9g00333 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00333 Rops-Chr9 4149467 4150677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00333 1 116 AS2 family AT3G26620 57.265 1.99e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g00333 LOB 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00333 - - gmx:100790640 224.557