Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00307 ATGGAAGCCACTTGGAATGATGATACCATTGTCAATGGTGGTGGTGGTGGTAATGATTCTACTGCTGCACCGTTCATGACGTTTAGAGGGAAACGACTTGTCGTTGATGAGCTGGATTTCTTCTCTGAGAAGAACAAAAAGACCGAAGATGATGATCAAATGATGCATAGTGTGGAGCTTCATGTAGATACTAGTTTAGATCTTCTTACGAAGAATAGTGGTAGCAACAGATCAACAGAGGAAGGTGCAGAATCAGAAAGTAAGAATGATAAGAGAAATGAGTTTGTAGCTTTGGTCGCTGAGTTACACCAAATGAATGCTGAAAATCAACGTTTAAGAGAATTGGTTGATCAGGGGAACAATAACTACAATGCCTTACGCATGCAACTTATCAAGCTAATGCAGAGGCATCATGAACATGGGAATAACCAAGTCATAGGAGAGAAAGATAAGAAAGAAGATGTAGATCCAAGGCCATTTTTAGAGATGGGAGTTGCTGAAAAGGATGAGCCTTCCCAGCAATCTTCAGAGAGCAAATTGAGAGAAAGCAAAAGCTTGGTTGACTTAATGGAGTGCAAGGAACAACAGATTTGCACCAGAAAAGATAAGGTGGATTCTGGTAAGGAAAGTTCAAAAACCAGAAGGGACGTGAGGCCTGATGAACAAGCATTCCCAGGGTGCCTCTCTGACAAAGTTCCTAGATTGAGTTCTTTAAGTGACCAAGCATCAGAGACTATGTCAATGATCAAGAAAGCTCGAGTATCAGTTCGAGCAAGATCAGAAACTTCAATGATTCCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCTAAAGGGAATCCTTGTCCAAGAGCTTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTACGGAAACAAGTACAAAGGTGTGCTGAAGATAGAAGTGTTTTGATCACAACATATGAAGGGCAGCATAACCATCCACTGCCTCCCACAGCACAAGCAATGGCATCCACCACATCTGCAGCTGCCTCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATGGCCTAATGAATCCAAGCATATTGGAAAGTGCTGCATTTCCCTGCTCACAAAACATGGCAACTCTCTCAGCCTCAGCCCCATTTCCAACCATCACATTGGATCTCACTCAAAGTGCTACTAATTCCTCACAGCTACAAAGGGAACCACAGGACCAACTTAGCCTCCTAACTCCACTTTTGACTCAGAAGTTTATGTCAGTTCCAAAAAATTTTGGACAGTCATTGTGTGATCAAACTAAGTTTTCTGGCTTCCATGAGTCTCAAGGAATGGACGCAGCTTCATCATTAAATGCAGCTACTGCTGCCATCACTGCAGACCCGAATTTCACTACAGCTCTTGTGGCCGCTATTACATCTATCATTGGGAGTTCACATCCAAACAACAATGGTACCAATAATACAAGTGGAGATCAGCAGTGCAATAATGCATAG 1488 0.4274 MEATWNDDTIVNGGGGGNDSTAAPFMTFRGKRLVVDELDFFSEKNKKTEDDDQMMHSVELHVDTSLDLLTKNSGSNRSTEEGAESESKNDKRNEFVALVAELHQMNAENQRLRELVDQGNNNYNALRMQLIKLMQRHHEHGNNQVIGEKDKKEDVDPRPFLEMGVAEKDEPSQQSSESKLRESKSLVDLMECKEQQICTRKDKVDSGKESSKTRRDVRPDEQAFPGCLSDKVPRLSSLSDQASETMSMIKKARVSVRARSETSMIPDGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSADGLMNPSILESAAFPCSQNMATLSASAPFPTITLDLTQSATNSSQLQREPQDQLSLLTPLLTQKFMSVPKNFGQSLCDQTKFSGFHESQGMDAASSLNAATAAITADPNFTTALVAAITSIIGSSHPNNNGTNNTSGDQQCNNA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00307 495 MobiDBLite consensus disorder prediction 162 183 - -
Rops9g00307 495 Gene3D WRKY domain 250 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00307 495 Coils Coil 95 129 - -
Rops9g00307 495 SMART WRKY_cls 265 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00307 495 MobiDBLite consensus disorder prediction 66 80 - -
Rops9g00307 495 SUPERFAMILY WRKY DNA-binding domain 258 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00307 495 MobiDBLite consensus disorder prediction 200 246 - -
Rops9g00307 495 Pfam WRKY DNA -binding domain 267 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00307 495 MobiDBLite consensus disorder prediction 475 495 - -
Rops9g00307 495 MobiDBLite consensus disorder prediction 200 221 - -
Rops9g00307 495 FunFam probable WRKY transcription factor 31 250 327 - -
Rops9g00307 495 MobiDBLite consensus disorder prediction 1 16 - -
Rops9g00307 495 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g00307 495 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 64 485 IPR044810 GO:0003700
Rops9g00307 495 ProSiteProfiles WRKY domain profile. 260 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00307 495 MobiDBLite consensus disorder prediction 63 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00307 Rops-Chr9 3899646 3903030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00307 7 484 WRKY Transcription Factor Family AT1G62300 45.211 5.50e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g00307 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00307 - - vum:124848283 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02998 11 52777914 52780007 Rops9g00307 9 3899646 3903030 PCT