Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00302 ATGACATTGGAGACAGGGAGAGTTGAAGGAGCAGAAGAAGAAGAGAAGATTGGGAAGGAAGAAAAAGGTATGAGGAGGGGCAGAGGAGGAGCCACGGCGGCAACAGCGGCGGCGGCGGCGGTCAACGGATCCGGGTCAAGGACGATATTAAAAGAGCCTCGTTACCGTGGCGTGAGAAAAAGACCATGGGGAAGGTTCGCAGCAGAGATCAGAGACCCGATTAAGAAAGCGAGGGTGTGGTTAGGAACATTCGATTCCGCCGAGGAAGCTGCTAGAGCCTACGACGCTGCCGCTCGTACCCTCCGAGGACCAAAGGCTAAAACTAATTTCCCTCTCTCTCCTTTCTGTTACAACCACCCAACCGTCGATCCCTTCTTTTACGCCGACCATCACCCTCAGAGACCAACCTCCAGTGGCATGAGTAGTACAGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCTCTGCGAAACCTACGACGCCGTTTTTGACGCCCACACGAAGATACCCTCGTACTCCACCTGTTGTCCCTGAAGATTGCCATAGTGACTGCGATTCTTCCTCGTCCGTTGTAGACGACGGAGAAAACATCGTTTCCTCGTCGTTTCGTCCACCTTTGCCGTTTGACCTAAACGCACTGCCGTTTGATGATGCTGACGTGGCAGCCGGTGATGATCTTCTGCAGCTCTGCCTCTGA 693 0.544 MTLETGRVEGAEEEEKIGKEEKGMRRGRGGATAATAAAAAVNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPFCYNHPTVDPFFYADHHPQRPTSSGMSSTVESFSGPRPPSAKPTTPFLTPTRRYPRTPPVVPEDCHSDCDSSSSVVDDGENIVSSSFRPPLPFDLNALPFDDADVAAGDDLLQLCL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00302 230 MobiDBLite consensus disorder prediction 128 195 - -
Rops9g00302 230 MobiDBLite consensus disorder prediction 7 27 - -
Rops9g00302 230 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Rops9g00302 230 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Rops9g00302 230 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Rops9g00302 230 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Rops9g00302 230 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 195 - -
Rops9g00302 230 MobiDBLite consensus disorder prediction 181 195 - -
Rops9g00302 230 FunFam Ethylene-responsive transcription factor 2 54 112 - -
Rops9g00302 230 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Rops9g00302 230 MobiDBLite consensus disorder prediction 134 149 - -
Rops9g00302 230 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Rops9g00302 230 MobiDBLite consensus disorder prediction 1 45 - -
Rops9g00302 230 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Rops9g00302 230 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00302 Rops-Chr9 3833519 3834491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00302 24 227 AP2-EREBP Transcription Factor Family AT1G50640 61.572 1.04e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g00302 AP2 7.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00302 K09286 - gmx:100803943 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00302 9 3833519 3834491 Rops9g00302 9 3833519 3834491 ECH
Rops11g02731 11 46996393 46997533 Rops9g00302 9 3833519 3834491 PCT