Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00290 ATGGACGAGGTAGTGGAACAACCAGCGGTTGAGAACGGTGGAGGACCGGAACCGGACGAGCGGTGCAGCAAGAAGGCCAAGGTGGAAGGTGCCTCTGACGGTGAATTGAAACGAGTGGCGGAGATTGTCTTGGTTTTGTCGACGATGGCGACGATGCGTGGTGGAAGGAAACCTACCGATGTGGAGATTGAGCTCATGAGAGAGGCTCGAACCAAGCTTGCACACCTTTGTCAAGGTCTTGCTCCTAAGGATATTGTTGCCAGGGAAGCTATTGGAACCGTTATTGAAGATCTTGGATTGAACTCCAAGATTAAGGACCAGAGGTTAGGGTTTCGAACTCCTAAAATGTCCATTGCCGAGAGGTATTCGCACGCTAAATGGAAGATGGAGGAAGCAAAGAAGTTTGCTGCAACATCCACAACATATGCATCTCAGCCCATGCAAACAAGCATTGGTGGAACAGTTGACAATCGTATGCCCACACATGCTGTTCGAATGCCTGTGCCTGATAAAGTAAGCCACACGGCAATCCCTTCTACAGGTACTGTGGTGTCTATTCCTCCCCATGTTCCTGCAGGATCTTCTGCAGCATTACAATATCAGTCGACCAGCAATGAAGCGAGACCGCCTGTGGTTTCTGGTGTAATCACTAGCAGTCACTTGGGGAGAGATCCATCTTCTTCAGCATTGCCTAAAGTTGAACATCCACAGTTCAAAGTTGACGGAGGATCAAATGGGTCTCCTTATGTGCTGCAAGTCCAAGCAAATTCATCAGCAAACCAACCATTGGTGAATGCTTCAGCATGGTCAATACAGACTCAACCTGTGTCATTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTGTGAATAACCCTGCCAAGGTTGAAGGAACAGCTGATATAACTGTATCAAGGGCAGGGCCACAAATAACAACAGATCAGAGCTTTAGACCATTTATTACTCAAACAGCACCGGGAAATTTGTCTAGTATGCACCAGCCATTGCAGGGTGTGAACATGGTTCAACCTCCTTTGATTCCTAGTCACACTGAAATTGCAAAGATTGTCCAGAAATTGTTACTACCAAATCTTCCTGACCATCCTACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGACCTCACTGTCAATGAAGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAATGCCTTCAGCCATCGATCTTAAGAGGAATTCATAATAGAAATGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATACGGTCGTGTCATGAGATCCTCAAACACACCACCGAAGTTGCCCTCTAATACAGTTGGCATTCAACTGTCTTCAGAGAAGAAAGCAGGGGACTTAGATGCAAAGGTCAGCCCACAGATGTTAACAACAAATGGGAGCTTTGTTCCATTTATTTCCGGCAGCAATCACAATGTTGAGCCATCATCTGACTCAAAGACCCCAGATATGAAAGATACACAAGGTACCAACATTTCATCCAGCATCGAAACTACTGATGAGAAGTCTGATCCAAACATCTGTATGAAATCCCTTAGTGTAGCTTCTAGTCCTTCCACTGGCTTGCCAGGTGAAAGTTCTGCTCAGCAAATAAATTCGAAGGCTTTGATCTGTAAGGAGACTTCAGAATCTGAAACTCTTCCTAAATTATCTGAGCTGGCTAAATGTGGAAATTTGCAGTCATCACATGATTTTCAAGTTGAGCAGACAGTGTCACAAGACAATGCTGAAGTATCATCAGATAAACACGTTAGTAGTAATTTTATGATTAGTAAACAAAAAGAGTTTCACGGGGGAGAAAATTTAACTTATGATATCCAGCGTGATGACCTAGATGTCACACAAGCAAATTTTGTTGGAGGTTCTGGAACTAATACCGAAGGTAGACAGAACTCTGCATCATCTTCAGATAGCTCACATACTGTAGAGTGGATTGGTGATGCTGTACAACTTGTAGATGAGAAAAAGTTCTACCAATCTTGCTGTGTTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCGTCCGGGCATGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGGTGATTTGCCAGGGAATATTGGCCATCCTTGTATATCTGAAGTTAATGAGGTTTTTGAATCTAATGGTGAAAGAACTGAAATGGCTAGCTTTATTCGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGACAATGTCAGTTAGGAATTGAGGCAAGTGCTAGAGTACGGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTTCAACCTGTTACCAGTTGA 2469 0.4358 MDEVVEQPAVENGGGPEPDERCSKKAKVEGASDGELKRVAEIVLVLSTMATMRGGRKPTDVEIELMREARTKLAHLCQGLAPKDIVAREAIGTVIEDLGLNSKIKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFAATSTTYASQPMQTSIGGTVDNRMPTHAVRMPVPDKVSHTAIPSTGTVVSIPPHVPAGSSAALQYQSTSNEARPPVVSGVITSSHLGRDPSSSALPKVEHPQFKVDGGSNGSPYVLQVQANSSANQPLVNASAWSIQTQPVSLARSASENKVPVNNPAKVEGTADITVSRAGPQITTDQSFRPFITQTAPGNLSSMHQPLQGVNMVQPPLIPSHTEIAKIVQKLLLPNLPDHPTWTPPSRDYMNKALTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSILRGIHNRNDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTVGIQLSSEKKAGDLDAKVSPQMLTTNGSFVPFISGSNHNVEPSSDSKTPDMKDTQGTNISSSIETTDEKSDPNICMKSLSVASSPSTGLPGESSAQQINSKALICKETSESETLPKLSELAKCGNLQSSHDFQVEQTVSQDNAEVSSDKHVSSNFMISKQKEFHGGENLTYDIQRDDLDVTQANFVGGSGTNTEGRQNSASSSDSSHTVEWIGDAVQLVDEKKFYQSCCVDGVTYRLQGHALFPSGHGKLTPSKLQSMWEDCKTGLKWVKVTKCYFPGDLPGNIGHPCISEVNEVFESNGERTEMASFIRGPCEVLPSDKFKQENDRQCQLGIEASARVRPIFLCRWFYDEIKKLFQPVTS* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00290 822 CDD BAH 693 821 - -
Rops9g00290 822 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 821 - -
Rops9g00290 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 445 IPR013083 -
Rops9g00290 822 ProSiteProfiles BAH domain profile. 694 821 IPR001025 GO:0003682
Rops9g00290 822 MobiDBLite consensus disorder prediction 221 240 - -
Rops9g00290 822 MobiDBLite consensus disorder prediction 646 667 - -
Rops9g00290 822 SMART PHD_3 383 432 IPR001965 -
Rops9g00290 822 MobiDBLite consensus disorder prediction 495 534 - -
Rops9g00290 822 Pfam PHD-finger 384 432 IPR019787 -
Rops9g00290 822 ProSitePatterns Zinc finger PHD-type signature. 384 431 IPR019786 -
Rops9g00290 822 Gene3D - 663 822 IPR043151 -
Rops9g00290 822 SUPERFAMILY FYVE/PHD zinc finger 374 439 IPR011011 -
Rops9g00290 822 ProSiteProfiles Zinc finger PHD-type profile. 381 434 IPR019787 -
Rops9g00290 822 MobiDBLite consensus disorder prediction 1 30 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops9g00290 PHD 1.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00290 - - gmx:100807139 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00290 9 3591445 3605970 Rops9g00290 9 3591445 3605970 ECH