Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00287 ATGGCGTCTTCTTCAGACTCATGGGTAAAGGAATATAATGAAGCAGTGAAACTTGCTGATGATATCAGCGGCATGATTTCAGAGTGGAGTTCATTTGCTGCATCTGGACCTGAAACACAGCGTCATTCATCTGCTATAAGAAGGAAGATTACAATTTTGGGGACCAGGCTTGATAGCTTGCAATCCCTTTTGTCAAAGAAGCAGCCTGTATCTGAGAAGGAGATGAATCGTCGCAGGGACATGCTTGCAAATTTGAGATCAAAAGTTAACCAAATGGCTTCCACGTTGAACATGTCAAATTTTGCAACTAGGGATAGTTTGCTTGGGCCGGAAACAAAACCGGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGAGTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTAACAAGCACGAAACATATTGCATTGGCAGTGAATGAAGAGTTGGATCTACATGCTAGACTCATTGATGACTTGGATCAACATGTAGATGTCACAGATTCTCGGCTCAGGCGGGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAGTCAAGGGGAGTTGTTCTTGCATGTGCATGCTTTTATCAGTGATTGGTGTAGTGGTTTTGGTTGTTGTGATTTGGCTGTTAGTCAAATATTTGTAA 690 0.4246 MASSSDSWVKEYNEAVKLADDISGMISEWSSFAASGPETQRHSSAIRRKITILGTRLDSLQSLLSKKQPVSEKEMNRRRDMLANLRSKVNQMASTLNMSNFATRDSLLGPETKPDAMSRTVGLDNNGVVGLQRQIMKEQDEGLEKLEETVTSTKHIALAVNEELDLHARLIDDLDQHVDVTDSRLRRVQKNLAVLNKRVKGSCSCMCMLLSVIGVVVLVVVIWLLVKYL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00287 229 PANTHER SYNTAXIN 38 215 IPR045242 -
Rops9g00287 229 FunFam syntaxin-51 isoform X2 135 197 - -
Rops9g00287 229 CDD SNARE_Qc 136 193 - -
Rops9g00287 229 Pfam SNARE domain 170 221 IPR000727 -
Rops9g00287 229 SMART tSNARE_6 128 195 IPR000727 -
Rops9g00287 229 Gene3D - 135 197 - -
Rops9g00287 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Rops9g00287 229 SUPERFAMILY SNARE fusion complex 124 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00287 Rops-Chr9 3551241 3553475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00287 1 229 SNARE and Associated Proteins AT1G16240 71.552 1.99e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00287 K08503 - gmx:100782666 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00287 9 3551241 3553475 Rops9g00287 9 3551241 3553475 ECH
Rops11g02705 11 46561769 46566685 Rops9g00287 9 3551241 3553475 PCT