Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00283 ATGAAAAGGCCATTGGAAAATTCAGATGATGAGACTGAGGCTGAGGTTCAGTCTCTCTCCGTGTCAAATTACCACCTTGAAGATGAAGATGACCTGCCTGTGTCTTTTGCTGTGTTGCCGATTCAGTGGGGTGATTCTGAGAGTTTTGATGCTAACAAAGAGCAGGTTTTCCTGCATGGGTCTGCTGACAATGGGTTGCAGAAGATTTTCATGCAAGTTACTGCATGGAAATTTGATCTTTCTGGTTTGAAACCAGAGATATCATTGCTTTCAAAGGATGGAAGGTGGATCAAGCTTCAGAAGCCAAGGAAGAGCTTTTTGGAAACTGTAAAGACCATCTTAGTCACCCTTCACTTTCTGCATCGTGTGAAGAAAAATCCCCAACTATCTTCCACATCTCTCTGGAAGAACTTTTATAAGGATAAGGAGTTGAGCTCTTATGGGCTCAGGCCTTCAAAACATGACTTATTGGACCATAGGCCTTTAATTGGTGAAGCTGCCAAAAGGGATGCTGTCTTGGCTAAGTCCAAGCTTTTGCTCATGGATACGGAGAAGAAACTGGGGAATCAGAAACTTCCTAATGAGGAAGTTAATGATTTGGGACGACCTGAATTTATAGTTGATGATATTGACAATGATATGATAGATGAAGCTAATGAAGAGTCAGAAGCAGAGGACGATTTGTTTAATTCTGTTTGTGCACTTTGTGACAATGGTGGTAAACTTTTGTGTTGTGATGGAGCATGCACGAGGTCATTTCATGCTACTGAGGAGGATGGTAGAGATTCTAATTGTGCTTCTCTTGGTTTTACCCAGAAGAAAGTTGATGAGATCCAGAGCTTTTATTGTAAGAATTGTGAATATCATCTGCACCAATGCTTTGCATGTGGCGAGCTGGGGTCTTCTGATAAAGCAAAGGGTGCTGAGGTCATCAAATGTGCTTCTGCAACTTGTGACCATTTTTATCATCCACATTGTGTTGCAAAGTTACTTCCCCAGGTAGATAAGCTTGCTGCAATGGAACCTGAGAGAAATATTGCTGATGGGGATCCTTTTATTTGTCCCACTCATTATTGCTGTGTCTGTAAAGAATCGGAAAATAAGATGGATCCTGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCAAAGTCATATCATCGTAAATGTTTGCCAAGAGAGATTGCTTTTGATGGCACAGATGATGATGTTATACCAAGGGCTTGGGAAGGTCTTTTACCAAACAATCGCATTCTTATTTATTGCTTAAATCATGAGATCGATGATGAACTTGGGACTCCTATAAGAGATCATATAAAATTCCCCAATACCAAAGCTACTGTTCAAGAAATTAACGCTACTAATGAGAGGACGAAAACTGCAACCAAAGAGAGAGTTGTATTAAAGAAGAACAATGCTGGCTTAGATAATTCATCTGGCAAAAGCATTGCTAAAAGATCTGAAGTGACTGGAAAACTGTCTTCTGGGAAAATTGGTAGCAAGAGGTCTGAAAAGATGATTTCTGGTTCAAATATCTCAAGGAAACCAAAATCAAATGAAACATCAAGGAGTTTGACTGAAAACAAGAGGTCAATCTCAAAGAAATTTGAAAAGCCTGACTGCGAGGAAAGCCAGCCCCCAACTGGTGAGAAATTATATGCTCTTACGCATAAGGGTTCTGAGCAAATCAAGCATGACAATCAGGCTGATGATGTGGTTAATGAGACCCTGTCTGTCAAGCCAATACGTTCATTACCTCCATTGGATGCTGATTCAGAGAGGAGGTTGGAGAGTGTGTTAGGAAAGCGCAAGTTTGCTTCTACTCACACTCGCTCATCGACAAATGTTGTGGAGAAGACCATTAAAAAGGGGAAGCTGGAAGGCTCAGTTGATGCTGTTCGAACAGCTCAGAAGAAGCTAGAGAGTGGGTGCAGCATTCAAGATGTAGAAGCTGTTCATGACGCTGATGTTCTGAAACGGATATGTAAGGGGAAGGCATCTATAAATGAAAGTCAGAAAATAAGCTTATATCATGGTAATGTTGTCCAAAAGAGTCAAGAGGGACAGGAGTATAATGTGAGCAGGTCTGGCAAGACATCATGGAAAAGAAAACATATTAAGGAAAATGATAGAAGAGGACGTATCATCTCACCAGCCAAAAGGCAGGTTGTAAATAAAATGCTAGAGGAACCTAACCATAGTCAACATAATCCAATTGAGGGGAGATCCTCTGTTGAAGGTTTTCAGCCCAAATCTGCAATGGCTAGTCCACATGTTGAGGTTAGGGATAATGGTTGTGGGAATTTGGAGCCCATTTCAGATTTTGGAAGAACCCATAGTGGGAATAAAAAAGGGCCAAGTGTAGCCAGTCCCTTTTCTGAATATGGGGTTACAAATATTGAGGAACACCATAAGAGGGAGGAAGAGAAGTGTCAGAGAGAATCAGATATAAGGCAACGAGTTGGCTTTTGTGAGGTTCAGGATCCTGATTCTTCACAGACTAACTGTCTATCTGGTCATGATCCTTCCTGTGGCCACATGGGATATAGTTATGCACAAGTTAGTCCACTAACTGAGTCATCTGATATCATGAATGCGCCGACTATGGAACGATATGCACCTTGCCTGGATGAATTAAGCCATGTCAGGATGAGTTCTTTGGGTTGTGAACCTCCTACATTCAGTCGAAGTGGCACTTCTGAACGTCGTGTGCTCCAACCTGGATGTGGTGATGTGCTGCGAGGTTTTGCACCTGGTCCTCACCATGCATATTCACGCCATCATTCAGCAGGACCCTGTAGTTGCCGAATGTCAGATCCGGTATGA 2823 0.4198 MKRPLENSDDETEAEVQSLSVSNYHLEDEDDLPVSFAVLPIQWGDSESFDANKEQVFLHGSADNGLQKIFMQVTAWKFDLSGLKPEISLLSKDGRWIKLQKPRKSFLETVKTILVTLHFLHRVKKNPQLSSTSLWKNFYKDKELSSYGLRPSKHDLLDHRPLIGEAAKRDAVLAKSKLLLMDTEKKLGNQKLPNEEVNDLGRPEFIVDDIDNDMIDEANEESEAEDDLFNSVCALCDNGGKLLCCDGACTRSFHATEEDGRDSNCASLGFTQKKVDEIQSFYCKNCEYHLHQCFACGELGSSDKAKGAEVIKCASATCDHFYHPHCVAKLLPQVDKLAAMEPERNIADGDPFICPTHYCCVCKESENKMDPELQFAVCRRCPKSYHRKCLPREIAFDGTDDDVIPRAWEGLLPNNRILIYCLNHEIDDELGTPIRDHIKFPNTKATVQEINATNERTKTATKERVVLKKNNAGLDNSSGKSIAKRSEVTGKLSSGKIGSKRSEKMISGSNISRKPKSNETSRSLTENKRSISKKFEKPDCEESQPPTGEKLYALTHKGSEQIKHDNQADDVVNETLSVKPIRSLPPLDADSERRLESVLGKRKFASTHTRSSTNVVEKTIKKGKLEGSVDAVRTAQKKLESGCSIQDVEAVHDADVLKRICKGKASINESQKISLYHGNVVQKSQEGQEYNVSRSGKTSWKRKHIKENDRRGRIISPAKRQVVNKMLEEPNHSQHNPIEGRSSVEGFQPKSAMASPHVEVRDNGCGNLEPISDFGRTHSGNKKGPSVASPFSEYGVTNIEEHHKREEEKCQRESDIRQRVGFCEVQDPDSSQTNCLSGHDPSCGHMGYSYAQVSPLTESSDIMNAPTMERYAPCLDELSHVRMSSLGCEPPTFSRSGTSERRVLQPGCGDVLRGFAPGPHHAYSRHHSAGPCSCRMSDPV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00283 940 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 13 674 - -
Rops9g00283 940 SMART PHD_3 232 287 IPR001965 -
Rops9g00283 940 SMART PHD_3 292 358 IPR001965 -
Rops9g00283 940 SMART PHD_3 359 425 IPR001965 -
Rops9g00283 940 MobiDBLite consensus disorder prediction 471 496 - -
Rops9g00283 940 Pfam Cytosine specific DNA methyltransferase replication foci domain 20 133 IPR022702 -
Rops9g00283 940 CDD PHD2_NSD 292 357 - -
Rops9g00283 940 MobiDBLite consensus disorder prediction 468 547 - -
Rops9g00283 940 MobiDBLite consensus disorder prediction 519 544 - -
Rops9g00283 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 290 IPR013083 -
Rops9g00283 940 MobiDBLite consensus disorder prediction 503 518 - -
Rops9g00283 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 380 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00283 Rops-Chr9 3491188 3498335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00283 221 334 PHD Transcription Factor Family AT3G14980 31.667 4.66e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00283 - - aprc:113845862 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00283 9 3491188 3498335 Rops9g00283 9 3491188 3498335 ECH
Rops11g02693 11 46432187 46448151 Rops9g00283 9 3491188 3498335 PCT