Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00272 ATGAGAGATCGCACCACAGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTGTGGATAAGCACATAATTGATGGCCGCACTGTTGAAGCTAAGAAGGCTGTTCCTAGGGATGATCAACATGCTATAAACAGACAGTCTGTCGGGGTCCATGGATCTCCTAGTCCTGCACGCACCAAAAAGATATTTGTTGGAGGTTTACCATCAACAATCACAGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAACTTTCCCCCGGACCTAGCCGGAGCCCATTGATGGGATATAACTATGGTTTGAATAGAGCCAGTAGCTACCTAAACAGTTATGCTCAAGGTTTTAATATGAATCCTATTGGAGGCTTTGGAGTCAGGATGGATGGCAGGTTTAGTCCACTTACTAATAGTAGAAGTGGGTTTGCCCCATTTGGCTCCAGTGGTTATGGAATGGGAATGAATTTGGATTCAGGATTGAACCCAAACTATGGAGGGACTTCCAATTATGGGAGTAGTCTAGGATATGGTCGGATTGGTCCTTTCTACAACAGCAACTCAAGCAGATATACCACTCCTATTGGCTATAGCAGGGGCAATGGGAGAAGTGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATACTGCAAATAACCCTGTCAGCCCTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGCTTCAGTTGGAAATAGTGGCACAAATTGGGGTTCATCTGTTCCAACCCAGGGTGGAGGGGCTGCTTCTGGATATGCTACTTGGAACAATGTTTATGAAGGTGGAGATAGTGGCATTGGATTAGGAGGGGGAGGGTATGGAAGGAACAACAGCACAAATGTGACTCAATCCTCAACATTTACTGCACCAACTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGCGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGGTTCAGGTTCATTTGGTTATGGACTTGGTGGTTTAGCTTCAGATGATCCTGTAAAGAGTTCTGAGGGTTTCATTGGAAACTATGATGTAACAAGTAGACGACCTAATAGAGGAATTGCTGCCTAG 1323 0.4429 MRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQHAINRQSVGVHGSPSPARTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLMGYNYGLNRASSYLNSYAQGFNMNPIGGFGVRMDGRFSPLTNSRSGFAPFGSSGYGMGMNLDSGLNPNYGGTSNYGSSLGYGRIGPFYNSNSSRYTTPIGYSRGNGRSDSLMNSTSRNVWGNGGLNNTANNPVSPGAYLGSGSGAFGASVGNSGTNWGSSVPTQGGGAASGYATWNNVYEGGDSGIGLGGGGYGRNNSTNVTQSSTFTAPTGGYEGSYGDLYRSGSVYSDSTWRSAASEIDGSGSFGYGLGGLASDDPVKSSEGFIGNYDVTSRRPNRGIAA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00272 440 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
Rops9g00272 440 SMART rrm1_1 70 142 IPR000504 GO:0003723
Rops9g00272 440 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 434 - -
Rops9g00272 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Rops9g00272 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Rops9g00272 440 SUPERFAMILY RNA-binding domain, RBD 64 165 IPR035979 GO:0003676
Rops9g00272 440 CDD RRM2_Hrp1p 70 147 - -
Rops9g00272 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 129 IPR000504 GO:0003723
Rops9g00272 440 Gene3D - 1 51 IPR012677 -
Rops9g00272 440 Gene3D - 68 148 IPR012677 -
Rops9g00272 440 SUPERFAMILY RNA-binding domain, RBD 1 62 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00272 Rops-Chr9 3390601 3394490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00272 9 148 Eukaryotic Initiation Factors Gene Family AT2G36660 32.237 2.22e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00272 K14411 - gmx:100788515 758.444