Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00271 ATGGTCTGTACAGGAGGTGAGTTATCAGAATCCGAGTCTTTCTTCAATTTCCTTAGGGCTGTTGATTCCAATAATGTACTTAATATTAGTTGGATTGGTTCAACATCACATCCTTGCTTGGTTAAGTTGAATGGTGTAAGATGTAACTTCAATGCTACCAATATTGTAGAGATAAGGCTTGAAAACTTGAACCTTAGTGGCATAATTGATGCAGATTCCCTATGCAGGCTCCAAAAGCTTAGGGTAGTGAGTTTAGCTAAGAATAACATCAGAGGAACTATTCCACATTCAATTTTGCACTGTGCAAGGTTGGTGCATTTGAATTTAACCAGCAATCAATTGAGTGGGAGATTACCAAAGGCTTTGACAAAATTGAAATATCTTGAGAGCTTGGACATATCTAACAACAATTTTTCTGGCATGATCCCAAGTAAACAAGAGTTTAGGCGTCTCTTTACTTATTATGTGACTCCAAGGAAGTTAGAAAGCAATAGTACTAGAGAGTGGTCAGAGGAAAGTAAAACAAATACAATACAACCAACACCAGGTCCTTCAAGCAACAACACATCTGAAAATGCCAATAAACCATGGTATCTCAAAGATGAAACCTTGTGGGCATTAGGTTTGGGCATTGGATTGCTTTTATCATCTCTCTTCTTTGTGGTAAAGGCACTCAAGTTATTAGAGACACAGGTAGGGAAAAGCCATCATGCATCACTCCATAAAAAGGCTACAACTGAGGTTCAAGAGGGGAAACTAAAAGGAGATTCAGAACTTGTATTCTTTGTTGAAGATCATGAAAGGTTCACAATGGAGGACCTACTTCGAGCCAAAGCTGACTTGCAACATGAAAGCTTTTGCAGCAACCTTTACAAGGTGAAACTAGAGAATAATGTCCATTATGCTGTCAAAAGATTAAAGAATTTGCAGGTTTCCTCTGAAGAATTTGGCAAAACATTAAGACAAATTAGTAACTTGAAGCATCCAAATATCCTCCCCCTTGTTGGTTACCGTTCTACCAGTGAAGAAAAATTGATCATTTACAAATATCAAAGCAATGGCAGTCTGCTCAATCTTTTACATGATTATATAGCAGGTAGAAAAGATTTTCCATGGAAACTGCGTCTCAATATAGCATGTGGGATTGCAAGGGGTTTGGCCTTCATATATAGGAAGTTGGATGGAGGAGAGGCCATTCCTCATGGAGATCTTAAGCCATCAAATATCCTTCTTAGTGACAAAAATGAACCACTAATAAGTGAGCATGGTTTATCAAAATTCTTGGACCCAAATAGAGGTTTCCTTTTTTCCTCTCAGGGATATACAGCTCCTGAAAAGAGTTTAACAGAAAAGGGTGATGTGTATAGCTTTGGAGTGATTCTGTTGGAACTACTAACAGGAAAAAGCATAGAAGTAAGTAGAATAGACCTTGCTAGATGGGTAAGGTCCATGGTGAGGGAGGAATGGACAGGTGAGGTCTTTGACAAAGAGGTTAGGGAAAATGAACATCAATGGGCATTTCCTTTGTTGAATATAGCCCTCATGTGTGTGTCACGTTTGCAAGAAAATAGGCCAACTACAACAGAGATTTTGGAGACAATAGAGGAGGTCATGGATGCACAAGAACATTATCATGATGAATGTTGTTCACTTCACAAAATCATACCTGATACATGGGATAGTCCAGGATCAAATTATTGA 1701 0.3845 MVCTGGELSESESFFNFLRAVDSNNVLNISWIGSTSHPCLVKLNGVRCNFNATNIVEIRLENLNLSGIIDADSLCRLQKLRVVSLAKNNIRGTIPHSILHCARLVHLNLTSNQLSGRLPKALTKLKYLESLDISNNNFSGMIPSKQEFRRLFTYYVTPRKLESNSTREWSEESKTNTIQPTPGPSSNNTSENANKPWYLKDETLWALGLGIGLLLSSLFFVVKALKLLETQVGKSHHASLHKKATTEVQEGKLKGDSELVFFVEDHERFTMEDLLRAKADLQHESFCSNLYKVKLENNVHYAVKRLKNLQVSSEEFGKTLRQISNLKHPNILPLVGYRSTSEEKLIIYKYQSNGSLLNLLHDYIAGRKDFPWKLRLNIACGIARGLAFIYRKLDGGEAIPHGDLKPSNILLSDKNEPLISEHGLSKFLDPNRGFLFSSQGYTAPEKSLTEKGDVYSFGVILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALMCVSRLQENRPTTTEILETIEEVMDAQEHYHDECCSLHKIIPDTWDSPGSNY* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00271 566 Pfam Leucine rich repeat 79 138 IPR001611 GO:0005515
Rops9g00271 566 SUPERFAMILY Protein kinase-like (PK-like) 289 534 IPR011009 -
Rops9g00271 566 Gene3D Transferase(Phosphotransferase) domain 1 352 555 - -
Rops9g00271 566 SUPERFAMILY L domain-like 17 145 - -
Rops9g00271 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Rops9g00271 566 MobiDBLite consensus disorder prediction 165 193 - -
Rops9g00271 566 FunFam Leucine-rich repeat receptor protein kinase EMS1 71 163 - -
Rops9g00271 566 ProSiteProfiles Protein kinase domain profile. 246 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00271 566 Gene3D Phosphorylase Kinase; domain 1 240 350 - -
Rops9g00271 566 Gene3D Ribonuclease Inhibitor 9 173 IPR032675 -
Rops9g00271 566 PANTHER OS05G0588300 PROTEIN 9 539 - -
Rops9g00271 566 Pfam Protein kinase domain 291 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00271 566 SMART serkin_6 275 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00271 566 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00271 Rops-Chr9 3382741 3384810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00271 8 537 Receptor kinase-like Gene Family AT4G23740 31.803 5.53e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops9g00271 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00271 - - gmx:100807491 840.106