Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00267 ATGCAAGCGTCTCTGAAACATAAGATGTCATATGGCTCCGGCAGGTTCAGCATTGAGCCTGTGCAAACTCTGGACTCATTTTGCTTCCTGCCAAGTGAGAATCTGGACAACTACTCATCCTCTGATAACAGTAACCATGCAACCTACCCTTCAGTTCATCCTTTAGACCAATATTGCTACCTGGAGTCTTCTATAAATTACAGTTTCCCTTGTCAAAATTCTCCATCCACTGTCAGTTTCTCACCTAACAATAGCCCAGTCTCAAAGCTACAGTCACAATCTTATGTGTTGAGGTCACAACATTCTCTTGAGATTATTAATGATTCAATGGAGAGTGACTCTTGTTTGACTTATAATCACGATGACTTGAAGCACAAGTTAAGAGAGCTTGAAAGTGCTATGCTGGGGCATGATGCAGATGTTGTGGACACATATGATACTGTAATTCCAGAAGAATCTGATTCATTTTTGTTAGGATTAGAGAACTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGCACTTGTGCAAAAGCAATGGCAGGGAATGATATGGAGACAACCGAATGGTTAATGTCAGAAGTGCGCAAAATGGTGTGTGTTTCAGGCAATCCAATCCAACGTTTGGGAGCATACATGCTGGAGGCTCTTGTGGCAAGGCTTGCCTCTTCTGGAAGCACAATCTACAAGGCCTTGAAGTGTAAAGAGCCTACTGGTAGTGAACTCCTTTCATACATGCATGTACTTTATGAAATTTGCCCATATCTCAAATTTGGGTACATGTCAGCAAATGGAGTAATTGCTGAAGCCACGAAGGATGAAAGTGAAGTCCACATAATTGATTTTCAGATTAACCAAGGAATCCAGTGGGTAAGCCTAATCCAAGCTCTGGCTGGTAGACCTGGAGGACCCCCAAAGATCAGAATAACAGGTGTTGATGACTCCACTTCAGCTTATGCTAGGGGAGGGGGACTTGATAGTGTTGGAGAAAGGTTATCAAGACTTGCACAGTTACATAATGTACCCTTTGAGTTCCATGCTATAGGAGTTGATCCCACTAAGGTGCAAGTTGAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATGTACCAGATGAAAGTGTGGACAGCCAGAATCATCGTGACCGGTTGGTGGGATTGGCAAAGTGCTTGTCTCCTAAGGTAGTGACCCTAGTTGAGCAAGAATCAAATAGCAACAACCTCCCATTCTTCCCTCGTTTCATTGATACAATGAACTACTACTTGGCAGTTTTTGAATCAATTGATGTTGCTCTTCCGAGGGATCACAAGGAAAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAGTTGCATGTGAAGGAGCAGAAAGAGTGGAACGTCATGAGCTTTTGAAAAAATGGAGATCACATTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCCTTTATTAATTGTTCAATAAAGAATCTTCAGGAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGTGCTCTATGTCTTGGTTGGATGAATCAAGTTCTTGTTACCTCTTGTGCTTGGAGGTGA 1638 0.4237 MQASLKHKMSYGSGRFSIEPVQTLDSFCFLPSENLDNYSSSDNSNHATYPSVHPLDQYCYLESSINYSFPCQNSPSTVSFSPNNSPVSKLQSQSYVLRSQHSLEIINDSMESDSCLTYNHDDLKHKLRELESAMLGHDADVVDTYDTVIPEESDSFLLGLENWKKMMEMISRGDLKEMLCTCAKAMAGNDMETTEWLMSEVRKMVCVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGSELLSYMHVLYEICPYLKFGYMSANGVIAEATKDESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGVDDSTSAYARGGGLDSVGERLSRLAQLHNVPFEFHAIGVDPTKVQVEDLELRPGEAIAVNFAMMLHHVPDESVDSQNHRDRLVGLAKCLSPKVVTLVEQESNSNNLPFFPRFIDTMNYYLAVFESIDVALPRDHKERINVEQHCLAREVVNLVACEGAERVERHELLKKWRSHFTMAGFTPYPLSSFINCSIKNLQESYQGHYTLEERDGALCLGWMNQVLVTSCAWR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00267 545 Pfam GRAS domain family 176 545 IPR005202 -
Rops9g00267 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Rops9g00267 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 539 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00267 Rops-Chr9 3342612 3345991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00267 1 545 GRAS Transcription Factor Family AT1G50600 56.058 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops9g00267 GRAS 7.3e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00267 - - gmx:100779977 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00267 9 3342612 3345991 Rops9g00267 9 3342612 3345991 ECH