Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00266 ATGGCTTCAATTTTCTCTCTCTACCCTTACAATCCCTTGCTGTATGTTCCAACTCCTTCAACTTCTGGTTCTGTTTCTTCGTTTTGGAACTTTGGGAGACAGAGCAAGTTGACAGTGCTTGCGGCGCATTCCAATCCGAAGATTCTCAAGACCAACAGAAAATCAAGGTATGGAAGAGCCCTGTCACCGTACGATAGCGAAGATGACGATGACGATGACGAAGATGATGATTGGTTCTCTGATGAATTTGCTGAGCCTGCTGCAGATTTTGATGTTAATAACAAAAGATTTAAGTCACAGACATTTAAAGATAAAGATGGAAAACAGGAAAAGGAGTGGGGTGTAAGATCTTTCAACTATGGACAAAGCACTAAAATGGCCAAAAGTGAGAGACTGGCATCCGTACAACAAGATGATTGTGGAAAGCTTGGTAGAAATTCAAAGGAGAAAAGGTATCCGAGGTTGTCTGAAGAGATTGATTTGGATGTCAGATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACACTTTATCCAAATGTATGACAGGCAGATGTCATCATTTCAAATTAATGTATGTTCTGCACAGGAAAGGTTAGATTACTTATTGAGTGTTGGTGTTAAACATAGTGATGTAAGAAGAATTCTTGTGAGGCAGCCACATATTCTGGGGTATACAGTGGAGAATAATTTGAAGCCTCATGTTGCTTTCTTGAGGGGCTTGGGTATACCTAATTCTAGAATCGGGCAAATCATTACTGCTTCTCCATCCTTGTTTTCTTACAGTATTGAGAATTCATTAAAACCAACAGTAAGATATTTAGTTGAGGAAGTTGGCATCAAGGAAAAGGATTTGGGTAAAGTCATTCAGCTGAGCCCCCAAATTCTTGTCCAACGTATTGACATTTCATGGAACACTCGATATATGTTTCTTACCAAAGAGTTGGGGGCACCTAGAGAGAGCATTGTGAAGATGGTGACAAAACATCCCCAGCTTCTCCATTACAGCATAGATGATGGATTACTGCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATTCAGAGATCTTGAAAATCTCGACCAGCCTTACACAGGTACTATCTCTGTCCTTGGAGGCGAATTTAAAGCCCAAGTATTTGTACTTGGTAAATGAACTTCACAATGAGGTGCAATCCTTGACCAAATATCCGATGTACCTTAGCTTGTCTTTAGACCAGAGAATTCGTCCTCGTCATAGGTTCTTAGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTTGTTCCAACTGATGAAGGCTTTTGTCAACGGTGGGCTGAACACATCACGCATCATGGTGCAGTCTGTGACCGTAAGGTGTTGGACAACATTGCAAACTTATGTTGGTATCAATTGAAGAACGAGAAGCTGTGTCAACTTGAGATTCTGCTTATGGATTCTGTCATTATACTTTTTTCTTCTTCTTCTTTTATCCTTTTTACCTTCAATGAAGAATTCTAG 1533 0.3986 MASIFSLYPYNPLLYVPTPSTSGSVSSFWNFGRQSKLTVLAAHSNPKILKTNRKSRYGRALSPYDSEDDDDDDEDDDWFSDEFAEPAADFDVNNKRFKSQTFKDKDGKQEKEWGVRSFNYGQSTKMAKSERLASVQQDDCGKLGRNSKEKRYPRLSEEIDLDVRWLPLLDYLSTFGIKESHFIQMYDRQMSSFQINVCSAQERLDYLLSVGVKHSDVRRILVRQPHILGYTVENNLKPHVAFLRGLGIPNSRIGQIITASPSLFSYSIENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRYMFLTKELGAPRESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSEILKISTSLTQVLSLSLEANLKPKYLYLVNELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDEGFCQRWAEHITHHGAVCDRKVLDNIANLCWYQLKNEKLCQLEILLMDSVIILFSSSSFILFTFNEEF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00266 510 Gene3D Transcription termination factor 3, mitochondrial 230 455 IPR038538 -
Rops9g00266 510 PANTHER CGI-12 PROTEIN-RELATED 165 450 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 254 286 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 218 249 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 364 396 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 328 359 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 291 323 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 SMART mt_12 397 428 IPR003690 GO:0003690|GO:0006355
Rops9g00266 510 FunFam Transcription termination factor MTERF9, chloroplastic 229 460 - -
Rops9g00266 510 MobiDBLite consensus disorder prediction 59 78 - -
Rops9g00266 510 Pfam mTERF 150 425 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops9g00266 mTERF 4.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00266 K15032 - gmx:100809638 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00266 9 3334946 3337846 Rops9g00266 9 3334946 3337846 ECH