Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00260 ATGCATCCTGCCACTGGTTTTCTCCTCAAACCCATTTTCCTTCATGGCTTATCTGGCTTCATCCATCTATTGTTGGTGTTGGCGGTTTTAGTGTCTTGGGTTTGGAAGAAAATCACAAGGGGTGCTAGGGATGAACCTAAGGAGAAATCCAATAACACCCTGTTTAAAATAACTATGTTTTGTTCTCTTGGTGTTTCTGCATTCAGTCTTGTTCTCTTCCTGTTTAATTACTTCTATTGGTATAGAAGTGGTTGGTCAGAAAAAAAGCTCGTGACCCTTTTGGATTTAGCGCTCAAAACAGTGGCTTGGGGTGTTGTTTATGTCTGCTTGCATAAGGGGTTCTTCAGTTTAGGTGAAAGAAGATTTCCATTGTTCTTCAAAACTTGGTGCGCTTTCTACCTCTTTATTTCCTCTTATTGCTTCGTAGTGGACATTTTTGTTCTGTGTGAAAATCATGTGGCCTTACCAGCTCAGAGCATAGTTTCTGATGTGGTATCTGCTTGTGTCGGTTTATTATTCTGTTACGTGGGGTATTTTATGAAAAATGAAGGTGAAGATAACAGTCTTCAAGAACCCCTTTTGAACGGTGATACACAAGTTGGTAACTCCTTGGGAACAAAAGAGAAAAAGGGGGGTGACATTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGATGGGTCCTCTTATAGCTGTTGGCAACAAGAAGACGTTGGACCTTGAGGATGTCCCTCAACTGGACAGCAGAGACAGTGTAGTTAGAGCTTTTCCAACTTTCAGAGATAAACTTGAGGCTGATTGTGGTACAATTAACAGTGTGACCACACTTAAGCTTGTGAAGTCATTGTTAATCTCAGCGTGGAAAGAGATTCTTTTCACAGCTTTTCTTGCATTGTTAAACACGTTGGCTTCTTATGTTGGTCCTTACCTCATTGATACTTTTGTACAATACCTTGATGGACAACGACAATATGAAAATCAAGGTTATGTTTTGGTTTCTGTATTTTTCTTTGCAAAGCTTGTAGAGTCCCTGTCGCAAAGACATTGGTTCTTTAGGTTGCAACAAATTGGAATTCGAATCCGAGCACTGCTTGTGACAATGATATATAATAAAGCCTTGACCATTTCATGTCAATCAAGGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGTCCGTTGATGCTGAAAGAGTTGGTGTATTCAGTTGGTACTTGCATGACTTGTGGATGGTAGCCTTGCAAGTTTCGTTAGCCTTGTTGATTTTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTCTTGTTGCAACTGTCCTTGTCATGTTGGCAAATGTTCCCTTGGGGTCATTGCAAGAGAAGTTTCAAAAAAAGTTGATGGAGTCTAAAGATACAAGAATGAAGACCACGTCTGAGATTTTAAGAAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTCAGGAATGCGGAGCAAGGCTGGTTAAAAAAATTTCTTTATACTTCAGCTATGACTACATTTGTATTTTGGGGTGCCCCCACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTTTTAGGAATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAGGAGCCCATTTATAGTCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTGTCTGTTGACAGGATTGCGTCATTCCTTTGTCTAGATGACTTGCAGTCTGATGTAGTAGAAAAGCTTCCTCGGGGTAGTTCTGTCACAGCAATTGAAGTAGTTGATGGAAATTTTTCTTGGGATTTATCTTCCCCTAATCCAACCTTGCAAAACATAAATCTCAGAGTCTCTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTTGAGATTTTGTCATTTGGTGATCAGACAATTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGAGGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGGTCTCACCTTTTTAAGGAATGCTTGCTGGGCCTTTTAAGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTTCTGACCTTATATTGGTGATGAAAGATGGGAAAATTACTCAATGTGGAAAGTTTAATGATCTGCTTAACAGTGGGACTGATTTTATGGAACTTGTTGGTGCACACAGAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTAATGAAATAAGTACCTTGGAACAAGATGTAAATGTCTCTAGCACTCATGGTATTAAAGAAAAAGAGGCAAACAAAGATGAGCAAAATGGTAAAGCAGACAACAAAGGTGAACCAAAAGGCCAGCTTGTTCAAGAAGAGGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACCACTGCATATGGAGGAGCTCTTGCACCATTCGTATTATTGGCTCACATTCTCTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCATGGGCAACTCCTATCTCAGCAGATGTGGAACCACCTGTTGGAGGAACGACTCTTATAGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTTGCCAGAGCAATGTTGCTTGTCACAGCTGGTTATAAGACAGCTACTCTCCTCTTCAATAAAATGCACTTCTGCGTTTTTCGAGCCCCCATGTCGTTTTTTGATTCGACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGGAGTGTTGCCTTCACAATGATCCAACTTCTGGGAATTATTGCAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATTTGGTATCAGCAATATTATTTACCACCAGCCCGAGAACTATCACGTTTAGTAGGAGTATGCAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGATGCAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAATTCAATATTGCTGGTGCTATGGAATGGTTATGCTTCCGCTTAGATATGTTGTCGTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGAATCATAGATCCAGGCATTGCTGGTTTAGCCGTTACCTATGGACTTAATTTGAATATGATACAAGCTTGGGTGATATGGAGTCTTTGCAACTTGGAGAATAAAATTATATCAGTAGAGAGAATACTTCAGTATACTTGCATTCCTAGTGAGCCTCCCCTTGTTGTGGAAGAAAATCAGCCAGATCCTTCTTGGCCCTCATATGGCGAGGTTGATATACAGGACTTACAGGTTCGTTATGCTCCTCATCTTCCTCTGGTGTTGCGTGGCCTTACATGCACATTTCGTGGAGGACTTAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGACTTGTTGAGCCTACTGCTGGGCAAGTTATGATTGACAGCATCAACATCTCTTCAATCGGACTTCATGATTTGAGGTCTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAGGGGACAGTGAGAAATAATCTGGACCCCCTGGAAGAGTACGCGGATGAACAGATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTTAGCGAGAATGGTGAGAATTGGAGCATGGGTCAAAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTCAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACGGATAATTTGATTCAGCAAACTCTTAGGCAGCATTTCTGTGACTCAACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCATCAGCATTGCTAGAGGACAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGGATTGTGTTACTTATGGGGGATAG 4464 0.4093 MHPATGFLLKPIFLHGLSGFIHLLLVLAVLVSWVWKKITRGARDEPKEKSNNTLFKITMFCSLGVSAFSLVLFLFNYFYWYRSGWSEKKLVTLLDLALKTVAWGVVYVCLHKGFFSLGERRFPLFFKTWCAFYLFISSYCFVVDIFVLCENHVALPAQSIVSDVVSACVGLLFCYVGYFMKNEGEDNSLQEPLLNGDTQVGNSLGTKEKKGGDIVTPFSNAGIFSILTFSWMGPLIAVGNKKTLDLEDVPQLDSRDSVVRAFPTFRDKLEADCGTINSVTTLKLVKSLLISAWKEILFTAFLALLNTLASYVGPYLIDTFVQYLDGQRQYENQGYVLVSVFFFAKLVESLSQRHWFFRLQQIGIRIRALLVTMIYNKALTISCQSRQGHTSGEIINFMSVDAERVGVFSWYLHDLWMVALQVSLALLILYKNLGLASIAALVATVLVMLANVPLGSLQEKFQKKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRNAEQGWLKKFLYTSAMTTFVFWGAPTFVSVVTFGTCMLLGIPLESGKILSALATFRILQEPIYSLPDTISMIAQTKVSVDRIASFLCLDDLQSDVVEKLPRGSSVTAIEVVDGNFSWDLSSPNPTLQNINLRVSHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGRDMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQEADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPASDLILVMKDGKITQCGKFNDLLNSGTDFMELVGAHRKALSTLDSLDGGTVSNEISTLEQDVNVSSTHGIKEKEANKDEQNGKADNKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALAPFVLLAHILFQVLQIGSNYWMAWATPISADVEPPVGGTTLIEVYVGLAIGSSFCILARAMLLVTAGYKTATLLFNKMHFCVFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSVAFTMIQLLGIIAVMSQVAWQVFIVFIPVIAVSIWYQQYYLPPARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQDANMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGIIDPGIAGLAVTYGLNLNMIQAWVIWSLCNLENKIISVERILQYTCIPSEPPLVVEENQPDPSWPSYGEVDIQDLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYADEQIWEALDKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFCDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPSALLEDKSSSFAQLVAEYTMRDCVTYGG* 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00260 1487 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1204 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00260 1487 FunFam ABC transporter C family member 10 280 593 - -
Rops9g00260 1487 SUPERFAMILY ABC transporter transmembrane region 924 1223 IPR036640 GO:0005524|GO:0016020
Rops9g00260 1487 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 218 1475 - -
Rops9g00260 1487 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1241 1475 IPR003439 GO:0005524
Rops9g00260 1487 Pfam ABC transporter 1259 1406 IPR003439 GO:0005524
Rops9g00260 1487 CDD ABC_6TM_ABCC_D2 924 1216 IPR044726 GO:0140359
Rops9g00260 1487 Gene3D ABC transporter type 1, transmembrane domain 884 1222 IPR036640 GO:0005524|GO:0016020
Rops9g00260 1487 Gene3D ABC transporter type 1, transmembrane domain 276 593 IPR036640 GO:0005524|GO:0016020
Rops9g00260 1487 Pfam ABC transporter 629 763 IPR003439 GO:0005524
Rops9g00260 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1471 IPR027417 -
Rops9g00260 1487 CDD ABCC_MRP_domain2 1239 1459 - -
Rops9g00260 1487 SUPERFAMILY ABC transporter transmembrane region 287 589 IPR036640 GO:0005524|GO:0016020
Rops9g00260 1487 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00260 1487 MobiDBLite consensus disorder prediction 865 898 - -
Rops9g00260 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 833 IPR027417 -
Rops9g00260 1487 Pfam ABC transporter transmembrane region 297 564 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00260 1487 Pfam ABC transporter transmembrane region 929 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00260 1487 CDD ABCC_MRP_domain1 611 811 - -
Rops9g00260 1487 ProSitePatterns ABC transporters family signature. 736 750 IPR017871 GO:0005524|GO:0016887
Rops9g00260 1487 Gene3D - 594 844 IPR027417 -
Rops9g00260 1487 FunFam ABC transporter C family member 5 596 843 - -
Rops9g00260 1487 FunFam ABC transporter C family member 5 885 1222 - -
Rops9g00260 1487 SMART AAA_5 638 811 IPR003593 GO:0016887
Rops9g00260 1487 SMART AAA_5 1267 1459 IPR003593 GO:0016887
Rops9g00260 1487 FunFam ABC transporter C family member 3 1224 1476 - -
Rops9g00260 1487 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 834 IPR003439 GO:0005524
Rops9g00260 1487 CDD ABC_6TM_ABCC_D1 298 585 IPR044746 GO:0140359
Rops9g00260 1487 Gene3D - 1224 1477 IPR027417 -
Rops9g00260 1487 MobiDBLite consensus disorder prediction 864 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00260 Rops-Chr9 3263845 3270120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00260 607 841 Calmodulin-binding Proteins AT2G36910 30.469 9.64e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00260 - K05666 gmx:100777836 2554.24