Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00259 ATGTTTGCTTGCATAAAGGGTTCTTCGGTTCAGGTGGAAGAAGATGATCACTCTTCTTCAGAGCTTGCTCAGAGCATAGTTTCTGATGTGATATCTGCTTGTGCGGGTTTATTCTTCTGTTATGTGGGGTATTTTATGAAAAATGAGCGTGAAGATAGCGGTCTTCAAGAACCTCTTTTGAATGGTGATACTCAAGTTGGTAATGCCTTAAGGTCAAAAGAGACAAAGGGGGGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACTTTCTCTTGGATGGGTCCTCTTATAGCCGTTGGCTATAAGAAGACCTTGGACTTTGAGGATGTCCCTCAACTGGACAATGGAGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGAGATAAACTTGAGGCTGATTGTGGTACAATTAACAGTGTGACCACACTTAAGCTGGTGAAGTCATTAGTAATCTCAGCATGGAAACATATTCTTTTCACAGCATTTCTTGCATCACTAAACACGGTGGCTTCTTATGTTGGTCCTTTTCTTATTGATGCTTTTGTTCAATACCTTGATGGACAAAGGCAATACGAAAATCAGGGTTATGTTTTGGTTTCTGTATTTTTCTTTGCAAAGATTGTTGAGTCCCTGTCGCAAAGACATTGGTTCTTTAGGTTGCAGCAAGTTGGAATTCGAATCCGATCACTGCTTGTGACAATGATATATAATAAAGCCTTGACCATTTCATGTCAATCAAGGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGTCTGTTGATGCTGAAAGAGTTGGCGTCTTCAGTTGGTACATGCATGATTTGTGGATGGTAGCTCTGCAAGTTTCATTAGCCTTGTTGATTTTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTCTTGTTGCAACTGTCATTGTTATGTTGGCAAATGTTCCTATGGGATCATTGCAAGAGAAGTATCAAAATAAGTTGATGGAGTCTAAAGATACAAGAATGAAGACCACATCCGAGATTTTAAGAAACATGAGGATCCTCAAACTACAAGGATGGGAACTGAAGTTTCTATCTAAAATAACTGAGCTCAGGAACACGGAGCAAGGCTGGTTAAAAAAATTTCTTTATACTTCAGTTATGACTACATTTTTATTTTGGGGTGCCCCCACGTTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTTTTAGGGATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAGGAGCCCCTTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGACAGGATTGCGTCATTCCTTCGTTTAGATGACTTGCAATCTGATGTGGTAGAAAAGCTTCCTCGGGGTAGTTCTGTCACAGCAATTGAAGTAGCTGATGGAAATTTTTCTTGGGATTTATCTTCCCCTAATCCAACGTTGCAAAACATAAATATCAGAGTCTCTTATGGCATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTATCAGGGATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGACAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCATGAAGAAGGATCTCGAGATTTTGTCATTTGGTGATCAGACGATTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATATCCATTTGATGATCCTTTTAGTGCTGTGGATGCTCATAGAGGATCTCACCTTTTTAAGGAATGCTTGCTGGGTCTTTTAAGTTCAAAAACGGTGGTTTATGTGACTCATCAAGTGGAGTTCTTACCCGCTGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACTGATCTGCTTAACAGCGGGACTGATTTCATAGAACTTGTTGGTGCACACAGAAAAGCTTTGTCTACACTTGATTCATTGAATGGTGGGACAGTATCTAATGAAATAAGTACCTTGGAACAAGACGTAAATGTCTGTGGCATTCATGGTGTTATAGAAAAAGAGGCAAACAAAGATGAGCAAAATAATAAAGCAGAAAATAAAGATGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGATTCTCTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCAGCAGATGTGGAGCCACCTGTTGGGGAACGACTCTTATGGTTGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCGTCCTTGTCAGAGCATTATTACTTGCCACAGCTGGTTTTAAGACAGCTACTTTACTGTTCAATAAAATGCACTTCTCTATTTTCCGTGCCCCTATGTCATTTTTTGATTCAACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGGGCTTTGGCCTTCCTCACAATCCAGCTACTGGGAATTATAGCAGTGATGTCTCAGATTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATTTGGTATCAGCAATATTATTTGCCATCAGCCCGAGAACTCTCACGTTTAGTTGGAGTATGCAAAGCCCCAATCATTCAACACTTCGCTGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAGCAAATATGAAACTGACTGATGGATATTCTCGACCAAATTTCAATATTACTGGTGCTATGGAATGGTTATGTTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGACTCATAGATCCAGAAGAAAATCGCCCAGATCCTTCTTGGCCCTCATATGGCGAGGTTGATGTACAGAACTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGCCTTACATGCACATTTTGTGGAGGACAGAAAACTGGCATTGTTGGGAGAACAGGAAGCGGTAAATCAACTCTCATTCAAACACTTTTCCGAATTGTTGAGCCTACTGCTGGGCAAGTTATGATTGACAGCATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGTATTATCCCTCAGGATCCAACCATGTTTGAGGGGACAGTGAGAAATAATCTGGATCCCCTGGAAGAACACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTGAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTTAGCGAGAATGGTGAGAATTGGAGCATGGGTCAAAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTCAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACGGATAATTTGATTCAACAAACTCTCAGGCAGCATTTCTGTGACTCAACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAACAGCATTGCTAGAGGACAAGTCATCATCTTTTGCACAACTTGTTGCAGAATATACCATGAGGTCCAACTCCAGTTTTGACTGA 3813 0.4068 MFACIKGSSVQVEEDDHSSSELAQSIVSDVISACAGLFFCYVGYFMKNEREDSGLQEPLLNGDTQVGNALRSKETKGGDTVTPFSNAGIFSILTFSWMGPLIAVGYKKTLDFEDVPQLDNGDSVVGAFPTFRDKLEADCGTINSVTTLKLVKSLVISAWKHILFTAFLASLNTVASYVGPFLIDAFVQYLDGQRQYENQGYVLVSVFFFAKIVESLSQRHWFFRLQQVGIRIRSLLVTMIYNKALTISCQSRQGHTSGEIINFMSVDAERVGVFSWYMHDLWMVALQVSLALLILYKNLGLASIAALVATVIVMLANVPMGSLQEKYQNKLMESKDTRMKTTSEILRNMRILKLQGWELKFLSKITELRNTEQGWLKKFLYTSVMTTFLFWGAPTFVSVVTFGTCMLLGIPLESGKILSALATFRILQEPLYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPRGSSVTAIEVADGNFSWDLSSPNPTLQNINIRVSYGMRVAVCGTVGSGKSTLLSCVLGEVSGILKVCGTKAYVAQSPWIQSDKIEDNILFGRDMDRERYEKVLEACSMKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYPFDDPFSAVDAHRGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFIELVGAHRKALSTLDSLNGGTVSNEISTLEQDVNVCGIHGVIEKEANKDEQNNKAENKDEPKGQLVQEEEREKDSLSSSSNWKQLLDGLGNSYLSRCGATCWGTTLMVVYVGLAIGSSFCVLVRALLLATAGFKTATLLFNKMHFSIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGALAFLTIQLLGIIAVMSQIAWQVFIVFIPVIAVSIWYQQYYLPSARELSRLVGVCKAPIIQHFAETISGASTIRSFDQQSRFQEANMKLTDGYSRPNFNITGAMEWLCFRLDMLSSITFAFSLIFLISIPQGLIDPEENRPDPSWPSYGEVDVQNLQVRYAPHLPLVLRGLTCTFCGGQKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEHTDEQIWEALDKCELGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFCDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPTALLEDKSSSFAQLVAEYTMRSNSSFD* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00259 1270 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 84 1004 - -
Rops9g00259 1270 FunFam ABC transporter C family member 5 462 706 - -
Rops9g00259 1270 Pfam ABC transporter 495 626 IPR003439 GO:0005524
Rops9g00259 1270 CDD ABC_6TM_ABCC_D2 794 1010 IPR044726 GO:0140359
Rops9g00259 1270 CDD ABC_6TM_ABCC_D1 164 451 IPR044746 GO:0140359
Rops9g00259 1270 CDD ABCC_MRP_domain2 1023 1243 - -
Rops9g00259 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 163 443 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00259 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1259 IPR003439 GO:0005524
Rops9g00259 1270 SUPERFAMILY ABC transporter transmembrane region 793 1001 IPR036640 GO:0005524|GO:0016020
Rops9g00259 1270 Pfam ABC transporter transmembrane region 795 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00259 1270 Pfam ABC transporter transmembrane region 164 430 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00259 1270 SMART AAA_5 1051 1236 IPR003593 GO:0016887
Rops9g00259 1270 SMART AAA_5 504 674 IPR003593 GO:0016887
Rops9g00259 1270 CDD ABCC_MRP_domain1 477 674 - -
Rops9g00259 1270 Gene3D ABC transporter type 1, transmembrane domain 142 457 IPR036640 GO:0005524|GO:0016020
Rops9g00259 1270 Gene3D ABC transporter type 1, transmembrane domain 766 1009 IPR036640 GO:0005524|GO:0016020
Rops9g00259 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 774 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00259 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1255 IPR027417 -
Rops9g00259 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 696 IPR027417 -
Rops9g00259 1270 Gene3D - 458 708 IPR027417 -
Rops9g00259 1270 MobiDBLite consensus disorder prediction 738 769 - -
Rops9g00259 1270 FunFam ABC transporter C family member 10 146 459 - -
Rops9g00259 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 697 IPR003439 GO:0005524
Rops9g00259 1270 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Rops9g00259 1270 FunFam ABC transporter C family member 3 1008 1260 - -
Rops9g00259 1270 Gene3D - 1010 1261 IPR027417 -
Rops9g00259 1270 MobiDBLite consensus disorder prediction 738 768 - -
Rops9g00259 1270 Pfam ABC transporter 1043 1190 IPR003439 GO:0005524
Rops9g00259 1270 SUPERFAMILY ABC transporter transmembrane region 154 455 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00259 Rops-Chr9 3235673 3241157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00259 473 704 Calmodulin-binding Proteins AT2G36910 30.078 1.68e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00259 - K05666 gmx:100811245 2066.97