Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00255 ATGCTTTTAGGGATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAGGAGCCCATTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGACAGGATTGCGTCATTCCTTCGTTTAGATGACTTGCAATCTGATGTGGTAGAAAAGCTTCCTCGGGGTAGTTCTGTCATAGCAATTGAAGTAGCTAATGGAAATTTTTCTTGGGATTTATCTTCCCCTAATCCAACGTTGCAAAACATAAATATCAGAGTCTCTTATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGGATCCTTAAGGTTTGTGGAACAAAGGCCTGTGTTGCTCAATCACCATGGATACAAAGCGACAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTTGCGATTTTGTCATTTGGTGATCAGACGATTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGCATGACACTTGTATGATAATTTTAGTAAGTGAAATTTTCTATCTTATTTGGGGGCAGGAATGCTTGCTGGGTCTTTTAAGTTCAAAAACGGTGGTTTATGTGACTCATCAAGTGGAGTTCTTACCCGCTGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACTGATCTGCTTAACAGCGGGACTGATTTCATAGAACTTGTTGGTGCACACAGAAAAGCTTTGTCTACACTTGATTCATTGAATGGTGGGACAGTATCTAATGAAATAAGTACCTTGGAACAAGACGTAAATGTCTGTGGCATTCATGGTGTTAAAGAAAAAGAGGCAAACAAAGATGAGCAAAATAATAAAGCAGAAAATAAAGATGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGCCTTTCCGTCTATTGGAAGTATATCACCACTGCATATGGAGGAGCTCTTGTACCATTTGTATTATTGGCTCAGATTCTCTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCAGCAGATGTGGAGCCACCTGTTGGGGGAACGACTCTTATGGTTGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCGTCCTTGCTTCTACTGACCAAAGTGCAGTGGATACAGATATTCCTTATCAAATTGGGGCTTTGGCCTTCCTCACAATCCAGCTACTGGGAATTATAGCAGTTATGTCTCAGATTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATTTGGTATCAGCAATATTATTTGCCATCAGCCCGAGAACTATCACGTTTAGTTGGAGTATGCAAAGCCCCAATCATTCAAAACTTCGCTGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAGCAAATATGAAACTGACTGATGGATATTCTCGGCCAAATTTCAATATTACTTGTGCTATGGAATGGTTATGCTTCCGCTTAGATATGTTGTCTTCTGTCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCATAG 1818 0.396 MLLGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPRGSSVIAIEVANGNFSWDLSSPNPTLQNINIRVSYGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKACVAQSPWIQSDKIEDNILFGRDMDRERYEKVLEACSLKKDLAILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKHDTCMIILVSEIFYLIWGQECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFIELVGAHRKALSTLDSLNGGTVSNEISTLEQDVNVCGIHGVKEKEANKDEQNNKAENKDEPKGQLVQEEEREKGKVGLSVYWKYITTAYGGALVPFVLLAQILFQVLQIGSNYWMAWATPISADVEPPVGGTTLMVVYVGLAIGSSFCVLASTDQSAVDTDIPYQIGALAFLTIQLLGIIAVMSQIAWQVFIVFIPVIAVSIWYQQYYLPSARELSRLVGVCKAPIIQNFAETISGASTIRSFDQQSRFQEANMKLTDGYSRPNFNITCAMEWLCFRLDMLSSVTFAFSLIFLISIP* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00255 605 MobiDBLite consensus disorder prediction 353 378 - -
Rops9g00255 605 Pfam ABC transporter transmembrane region 460 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00255 605 SUPERFAMILY ABC transporter transmembrane region 389 602 IPR036640 GO:0005524|GO:0016020
Rops9g00255 605 Gene3D - 51 326 IPR027417 -
Rops9g00255 605 Pfam ABC transporter 90 224 IPR003439 GO:0005524
Rops9g00255 605 Coils Coil 346 366 - -
Rops9g00255 605 Gene3D ABC transporter type 1, transmembrane domain 348 459 IPR036640 GO:0005524|GO:0016020
Rops9g00255 605 CDD ABCC_MRP_domain1 72 291 - -
Rops9g00255 605 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
Rops9g00255 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 314 IPR003439 GO:0005524
Rops9g00255 605 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 460 605 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00255 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 313 IPR027417 -
Rops9g00255 605 Gene3D ABC transporter type 1, transmembrane domain 460 604 IPR036640 GO:0005524|GO:0016020
Rops9g00255 605 SMART AAA_5 99 291 IPR003593 GO:0016887
Rops9g00255 605 FunFam ABC transporter C family member 5 57 255 - -
Rops9g00255 605 CDD ABC_6TM_ABCC_D2 402 602 IPR044726 GO:0140359
Rops9g00255 605 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 4 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00255 Rops-Chr9 3164418 3166886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00255 72 321 Calmodulin-binding Proteins AT2G36910 29.259 4.18e-23 102