Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00249 ATGACCATGTTTTGTTCTCTGGGTGTTTCTGCATTCAATCTTGTTCTCTACCTGTTTAATTACTTCTACTGGTATAGAAGTGGTTGGTTAGAAGAAAAGCTCGTGACCCTTTTGGATTTAGCCCTCAAAACAGTTGCTTGGGGTGTTGTTCATGTTTGCTTGCATAAAGGGTTCTTCGGTTCAGGTGGAAGAAGATTATCACTCTTCTTCAGAGCTTGGTGCGCTTTCTACCTCTTTATTTCATGTTATTGCTTCGTAGTTGACATTGTTGTTCTATATGGAAACAACGTTGCCTTACTAGCTCAGAGCATAGTTTCTAATGTGATATCTGCTTGTGCGGGTTTATTCTTCTGTTATGTGGGAAGTGGTTGGTCAGAAGGAAAGCTCGTGACCCTTTTGGATTTAGCGCTCAAAACAGTTGCTTGGGGTGTTGTTCATGTTTGCTTGCATAAAGGGTTCTTCGGTTCAGGTAGAAGAAGATTATCACTCTTCTTCAGAGCTTGGTGCGCTTTCTACCTCTTTATTTCATGTTATTGCTTCGTAGTTGACATTGTTGTTCTATATGGAAACAACGTTGCCTTACCAGCTCAGAGCATAGTTTCTGATGTGATATCTGCTTGTGCGGGTTTATTCTTCTGTTATGTGGGGTATTTTATGAAAAATGAGCGTGAAGATAGCGGTCTTCAAGAACCTCTTTTGAATGGTGATACTCAAGTTGGTAATGCCTTAAGGTCAAAAGAGACAAAGGGGGGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACTTTCTCTTGGATGGGTCCTCTTATAGCCGTTGGCTATAAGAAGACCTTGGACTTTGAGGATGTCCCTCAACTGGACAATGGAGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGAGATAAACTTGAGGCTGATTGTGGTACAATTAACAGTGTGACCACACTTAAGCTGGTGAAGTCATTAGTAATCTCAGCATGGAAACATATTCTTTTCACAGCATTTCTTGCATCACTAAACACGGTGGCTTCTTATGTTGGTCCTTTTCTTATTGATGCTTTTGTTCAATACCTTGATGGACAAAGGCAATACGAAAATCAGGGTTATGTTTTGGTTTCTGTATTTTTCTTTGCAAAGATTGTTGAGTCCCTGTCGCAAAGACATTGGTTCTTTAGGTTGCAGCAAGTTGGAATTCGAATCCGATCACTGCTTGTGACAATGATATATAATAAAGCCTTGACCATTTCATGTCAATCAAGGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGTCTGTTGATGCTGAAAGAGTTGGCATCTTCAGTTGGTACATGCATGATTTGTGGATGGTAGCTCTGCAAGTTTCATTAGCCTTGTTGATTTTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTCTTGTTGCAACTGTCATTGTTATGTTGGCAAATGTTCCTATGGGATCATTGCAAGAGAAGTATCAAAATAAGTTGATGGAGTCTAAAGATACAAGAATGAAGACCACATCCGAGATTTTAAGAAACATGAGGATCCTCAAACTACAAGGATGGGAACTGAAGTTTCTATCTAAAATAACTGAGCTCAGGAACACGGAGCAAGGCTGGTTAAAAAAATTTCTTTATACTTCAGCTATGACTACATTTTTATTTTGGGGTGCCCCCACGTTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTTTTAGGGATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAGGAGCCCCTTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGACAGGATTGCGTCATTCCTTCGTTTAGATGACTTGCAATCTGATGTGGTAGAAAAGCTTCCTCGGGGTAGTTCTGTCACAGCAATTGAAGTAGCTGATGGAAATTTTTCTTGGGATTTATCTTCCCCTAATCCAACGTTGCAAAACATAAATATCAGAGTCTCTTATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGGATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGACAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCATGAAGAAGGATCTCGAGATTTTGTCATTTGGTGATCAGACGATTATAGGAGAGCGTGGACTAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTGCTGGGTCTTTTAAGTTCAAAAACGGTGGTTTATGTGACTCATCAAGTGGAGTTCTTACCCGCTGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACTGATCTGCTTAACAGCGGGACTGATTTCATAGAACTTGTTGGTGCACACAGAAAAGCTTTGTCTACACTTGATTCATTGAATGGTGGGACAGTATCTAATGAAATAAGTACCTTGGAACAAGACGTAAATGTCTGTGGCATTCATGGTGTTAAAGAAAAAGAGGCAAACAAAGATGAGCAAAATAATAAAGCAGAAAATAAAGATGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGCCTTTCCGTCTATTGGAAGTATATCACCACTGCATATGGAGGAGCTCTTGTACCATTTGTATTATTGGCTCAGATTCTCTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCATGGGCAACTCCTATCTCAGCAGATGTGGAGCCACCTGTTGGGGGAACGACTCTTATGGTTGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCGTCCTTGTCAGAGCATTATTACTTGCCACAGCTGGTTTTAAGACAGCTACTTTACTGTTCAATAAAATGCACTTCTCTATTTTCCGTGCCCCTATGTCATTTTTTGATTCAACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGGGCTTTGGCCTTCCTCACAATCCAGCTACTGGGAATTATAGCAGTGATGTCTCAGATTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATTTGGTATCAGCAATATTATTTGCCATCAGCCCGAGAACTCTCACGTTTAGTTGGAGTATGCAAAGCCCCAATCATTCAACACTTCGCTGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAGCAAATATGAAACTGACTGATGGATATTCTCGACCAAATTTCAATATTACTGGTGCTATGGAATGGTTATGTTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGAGTCATAGATCCAGGCATTGCTGGTTTAGCTGTTACCTACGGACTTAATTTAAATTTGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCAGTAGAGAGAATACTTCAGTATACTTGCATTCCTAGTGAGCCTCCCCTTGTTGTAGAAGAAAATCGCCCAGATCCTTCTTGGCCCTCATATGGCGAGGTTGATGTACAGAACTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGCCTTACATGCACATTTTGTGGAGGACAGAAAACTGGCATTGTTGGGAGAACAGGAAGCGGTAAATCAACTCTCATTCAAACACTTTTCCGAATTGTTGAGCCTACTGCTGGGCAAGTTATGATTGACAGCATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGTATTATCCCTCAGGATCCAACCATGTTTGAGGGGACAGTGAGAAATAATCTGGATCCCCTGGAAGAACACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTGAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTTAGCGAGAATGGTGAGAATTGGAGCATGGGTCAAAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTCAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACGGATAATTTGATTCAACAAACTCTCAGGCAGCATTTCTGTGACTCAACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAACAGCATTGCTAGAGGACAAGTCATCATCTTTTGCACAACTTGTTGCAGAATATACCATGAGGTCCAACTCCAGTTTTGACTGA 4578 0.4059 MTMFCSLGVSAFNLVLYLFNYFYWYRSGWLEEKLVTLLDLALKTVAWGVVHVCLHKGFFGSGGRRLSLFFRAWCAFYLFISCYCFVVDIVVLYGNNVALLAQSIVSNVISACAGLFFCYVGSGWSEGKLVTLLDLALKTVAWGVVHVCLHKGFFGSGRRRLSLFFRAWCAFYLFISCYCFVVDIVVLYGNNVALPAQSIVSDVISACAGLFFCYVGYFMKNEREDSGLQEPLLNGDTQVGNALRSKETKGGDTVTPFSNAGIFSILTFSWMGPLIAVGYKKTLDFEDVPQLDNGDSVVGAFPTFRDKLEADCGTINSVTTLKLVKSLVISAWKHILFTAFLASLNTVASYVGPFLIDAFVQYLDGQRQYENQGYVLVSVFFFAKIVESLSQRHWFFRLQQVGIRIRSLLVTMIYNKALTISCQSRQGHTSGEIINFMSVDAERVGIFSWYMHDLWMVALQVSLALLILYKNLGLASIAALVATVIVMLANVPMGSLQEKYQNKLMESKDTRMKTTSEILRNMRILKLQGWELKFLSKITELRNTEQGWLKKFLYTSAMTTFLFWGAPTFVSVVTFGTCMLLGIPLESGKILSALATFRILQEPLYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPRGSSVTAIEVADGNFSWDLSSPNPTLQNINIRVSYGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSDKIEDNILFGRDMDRERYEKVLEACSMKKDLEILSFGDQTIIGERGLNLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFIELVGAHRKALSTLDSLNGGTVSNEISTLEQDVNVCGIHGVKEKEANKDEQNNKAENKDEPKGQLVQEEEREKGKVGLSVYWKYITTAYGGALVPFVLLAQILFQVLQIGSNYWMAWATPISADVEPPVGGTTLMVVYVGLAIGSSFCVLVRALLLATAGFKTATLLFNKMHFSIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGALAFLTIQLLGIIAVMSQIAWQVFIVFIPVIAVSIWYQQYYLPSARELSRLVGVCKAPIIQHFAETISGASTIRSFDQQSRFQEANMKLTDGYSRPNFNITGAMEWLCFRLDMLSSITFAFSLIFLISIPQGVIDPGIAGLAVTYGLNLNLIQAWVIWNLCNLENKIISVERILQYTCIPSEPPLVVEENRPDPSWPSYGEVDVQNLQVRYAPHLPLVLRGLTCTFCGGQKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEHTDEQIWEALDKCELGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFCDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPTALLEDKSSSFAQLVAEYTMRSNSSFD* 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00249 1525 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 616 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00249 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1272 1510 IPR027417 -
Rops9g00249 1525 CDD ABCC_MRP_domain2 1278 1498 - -
Rops9g00249 1525 CDD ABCC_MRP_domain1 650 850 - -
Rops9g00249 1525 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Rops9g00249 1525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1280 1514 IPR003439 GO:0005524
Rops9g00249 1525 SMART AAA_5 1306 1491 IPR003593 GO:0016887
Rops9g00249 1525 SMART AAA_5 677 850 IPR003593 GO:0016887
Rops9g00249 1525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 873 IPR003439 GO:0005524
Rops9g00249 1525 Coils Coil 905 925 - -
Rops9g00249 1525 MobiDBLite consensus disorder prediction 912 937 - -
Rops9g00249 1525 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 963 1243 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00249 1525 CDD ABC_6TM_ABCC_D2 961 1255 IPR044726 GO:0140359
Rops9g00249 1525 SUPERFAMILY ABC transporter transmembrane region 961 1262 IPR036640 GO:0005524|GO:0016020
Rops9g00249 1525 FunFam ABC transporter C family member 5 635 882 - -
Rops9g00249 1525 Pfam ABC transporter 668 802 IPR003439 GO:0005524
Rops9g00249 1525 Pfam ABC transporter 1298 1445 IPR003439 GO:0005524
Rops9g00249 1525 FunFam ABC transporter C family member 5 924 1261 - -
Rops9g00249 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 872 IPR027417 -
Rops9g00249 1525 Pfam ABC transporter transmembrane region 964 1206 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00249 1525 Pfam ABC transporter transmembrane region 337 603 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00249 1525 SUPERFAMILY ABC transporter transmembrane region 327 628 IPR036640 GO:0005524|GO:0016020
Rops9g00249 1525 Gene3D - 632 884 IPR027417 -
Rops9g00249 1525 FunFam ABC transporter C family member 10 319 632 - -
Rops9g00249 1525 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 257 1514 - -
Rops9g00249 1525 Gene3D - 1263 1516 IPR027417 -
Rops9g00249 1525 FunFam ABC transporter C family member 3 1263 1515 - -
Rops9g00249 1525 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524|GO:0016887
Rops9g00249 1525 Gene3D ABC transporter type 1, transmembrane domain 922 1261 IPR036640 GO:0005524|GO:0016020
Rops9g00249 1525 Gene3D ABC transporter type 1, transmembrane domain 315 631 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00249 Rops-Chr9 3019314 3032886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00249 646 880 Calmodulin-binding Proteins AT2G36910 30.859 8.94e-25 110